Wall clock time and date at job start Mon Mar 30 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48498 * 109.47138 * 269.99546 * 3 2 1 5 5 H 1.48498 * 109.47109 * 29.99921 * 3 2 1 6 6 H 1.48505 * 109.46861 * 149.99613 * 3 2 1 7 7 C 1.39918 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00213 * 162.81406 * 7 2 1 9 9 C 1.41346 * 119.99816 * 343.09351 * 7 2 1 10 10 C 1.40751 * 120.62872 * 334.91475 * 9 7 2 11 11 N 1.31520 * 120.30641 * 179.97438 * 10 9 7 12 12 C 1.32323 * 121.80338 * 0.03268 * 11 10 9 13 13 F 1.35099 * 119.37124 * 179.97438 * 12 11 10 14 14 C 1.38963 * 121.26067 * 359.96999 * 12 11 10 15 15 C 1.36890 * 119.53933 * 359.76374 * 14 12 11 16 16 C 1.50699 * 120.83086 * 180.27708 * 15 14 12 17 17 F 1.39895 * 109.47339 * 120.20587 * 16 15 14 18 18 F 1.39903 * 109.47066 * 240.21009 * 16 15 14 19 19 H 0.96999 * 120.00535 * 0.02562 * 1 2 3 20 20 H 1.07994 * 119.84862 * 359.97438 * 10 9 7 21 21 H 1.07997 * 120.22542 * 180.02562 * 14 12 11 22 22 H 1.09004 * 109.46800 * 0.20648 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5400 1.4402 0.7002 7 6 2.0081 -1.2117 0.0005 8 1 3.0519 -1.2327 -0.2758 9 6 1.3472 -2.4092 0.3571 10 6 0.2118 -2.3814 1.1884 11 7 -0.3986 -3.4995 1.5158 12 6 0.0238 -4.6768 1.0841 13 9 -0.6403 -5.7945 1.4513 14 6 1.1375 -4.7856 0.2601 15 6 1.8102 -3.6549 -0.1182 16 6 3.0177 -3.7386 -1.0159 17 9 2.7802 -3.0096 -2.1861 18 9 4.1293 -3.2074 -0.3530 19 1 -0.4851 0.8400 -0.0004 20 1 -0.1599 -1.4377 1.5593 21 1 1.4675 -5.7550 -0.0828 22 1 3.2100 -4.7810 -1.2700 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238678738.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:07 Heat of formation + Delta-G solvation = -128.123931 kcal Electronic energy + Delta-G solvation = -14366.663991 eV Core-core repulsion = 11278.406472 eV Total energy + Delta-G solvation = -3088.257520 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.09456 -47.62044 -46.06680 -38.46664 -34.23371 -32.22638 -29.84731 -26.38578 -25.04105 -22.20722 -20.89078 -17.85452 -16.99578 -16.95627 -16.32842 -15.53189 -15.05179 -14.68616 -14.61590 -14.15366 -13.06984 -13.02619 -12.47605 -12.42508 -12.22683 -11.88925 -11.70321 -11.39027 -11.20889 -10.96557 -10.44430 -10.29249 -9.59461 -8.86387 -8.35034 -7.74121 -7.20683 -4.76994 2.29859 2.32220 2.92361 2.94366 3.01774 3.69422 4.27171 4.58102 4.93112 5.16357 5.28061 5.49158 5.85488 5.98030 6.24581 6.60467 6.75965 6.91392 7.00127 7.42209 7.72449 8.03982 8.29149 8.37284 9.18506 9.74998 Molecular weight = 217.04amu Principal moments of inertia in cm(-1) A = 0.028271 B = 0.013277 C = 0.009775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.164779 B = 2108.446504 C = 2863.812395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.419 4.419 8 H 0.096 0.904 9 C 0.081 3.919 10 C 0.084 3.916 11 N -0.487 5.487 12 C 0.130 3.870 13 F -0.149 7.149 14 C -0.110 4.110 15 C -0.253 4.253 16 C 0.338 3.662 17 F -0.202 7.202 18 F -0.208 7.208 19 H 0.292 0.708 20 H 0.164 0.836 21 H 0.116 0.884 22 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.250 -0.942 -1.504 4.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.149 4.149 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.448 4.448 8 H 0.114 0.886 9 C 0.075 3.925 10 C -0.084 4.084 11 N -0.200 5.200 12 C -0.017 4.017 13 F -0.129 7.129 14 C -0.131 4.131 15 C -0.260 4.260 16 C 0.285 3.715 17 F -0.183 7.183 18 F -0.190 7.190 19 H 0.104 0.896 20 H 0.181 0.819 21 H 0.134 0.866 22 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.302 -0.882 -0.998 3.561 hybrid contribution 0.852 0.521 -0.586 1.158 sum 4.154 -0.360 -1.585 4.461 Atomic orbital electron populations 1.69744 1.07895 1.30847 1.30993 1.26135 0.94909 1.02313 0.91553 0.86074 0.80669 0.79094 0.79824 1.18892 1.19555 1.17846 1.19846 0.98587 0.90398 1.35950 0.88618 1.18296 0.92470 0.92005 0.89732 1.22887 0.94892 0.93566 0.97058 1.66590 1.31761 0.98199 1.23411 1.17420 0.95591 0.82005 1.06720 1.91400 1.81167 1.48733 1.91558 1.20594 0.95624 0.98054 0.98868 1.19895 1.02805 0.94714 1.08617 1.19839 0.82008 0.91373 0.78328 1.92965 1.94769 1.81050 1.49564 1.92932 1.55307 1.89030 1.81694 0.89620 0.81876 0.86626 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.22 10.97 55.55 0.61 -17.62 14 2 C 0.07 1.67 5.16 -17.34 -0.09 1.58 14 3 Si 0.92 17.23 29.59 -169.99 -5.03 12.20 14 4 H -0.26 -4.93 7.11 56.52 0.40 -4.52 14 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 14 6 H -0.25 -4.78 7.11 56.52 0.40 -4.37 14 7 C -0.42 -10.32 7.93 -37.77 -0.30 -10.62 14 8 H 0.10 2.33 6.21 -52.49 -0.33 2.00 14 9 C 0.08 2.04 5.57 -106.66 -0.59 1.44 14 10 C 0.08 2.16 9.89 -16.74 -0.17 1.99 14 11 N -0.49 -12.61 10.36 -12.84 -0.13 -12.74 14 12 C 0.13 3.14 8.41 -17.07 -0.14 3.00 14 13 F -0.15 -3.42 17.28 2.25 0.04 -3.38 14 14 C -0.11 -2.41 9.66 -39.80 -0.38 -2.79 14 15 C -0.25 -5.80 5.41 -104.01 -0.56 -6.37 14 16 C 0.34 6.69 4.98 36.01 0.18 6.87 14 17 F -0.20 -4.32 16.62 2.25 0.04 -4.28 14 18 F -0.21 -4.28 15.82 2.25 0.04 -4.24 14 19 H 0.29 6.17 8.30 -40.82 -0.34 5.84 14 20 H 0.16 4.15 6.19 -52.49 -0.32 3.83 14 21 H 0.12 2.08 7.98 -52.49 -0.42 1.66 14 22 H 0.10 1.47 7.92 -51.93 -0.41 1.06 14 LS Contribution 215.58 15.07 3.25 3.25 Total: -1.00 -26.83 215.58 -3.87 -30.70 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -0.61 Total: 1.01 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.06 Total: -4.89 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.48 Total: -30.36 kcal Atomic # 9 Polarization: -12.02 SS G_CDS: 0.11 Total: -11.91 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -26.83 -3.87 -30.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238678738.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.426 kcal (2) G-P(sol) polarization free energy of solvation -26.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds