Wall clock time and date at job start Mon Mar 30 2020 02:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30284 * 1 3 3 Si 1.86802 * 120.00185 * 2 1 4 4 H 1.48494 * 109.47240 * 270.00233 * 3 2 1 5 5 H 1.48500 * 109.46936 * 29.99818 * 3 2 1 6 6 H 1.48497 * 109.47288 * 149.99952 * 3 2 1 7 7 C 1.40816 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.39581 * 119.99914 * 359.97438 * 7 2 1 10 10 O 1.22303 * 120.00182 * 0.02562 * 9 7 2 11 11 C 1.47256 * 119.99708 * 179.97438 * 9 7 2 12 12 C 1.40567 * 119.17237 * 180.02562 * 11 9 7 13 13 C 1.35484 * 120.81062 * 180.02562 * 12 11 9 14 14 C 1.47322 * 119.12124 * 359.97438 * 13 12 11 15 15 N 1.31086 * 120.75690 * 179.97438 * 14 13 12 16 16 C 1.25004 * 119.99711 * 180.02562 * 15 14 13 17 17 O 8.95867 * 125.89182 * 179.97438 * 2 1 3 18 18 C 1.47325 * 118.48711 * 0.27729 * 14 13 12 19 19 C 1.35489 * 119.11825 * 359.45891 * 18 14 13 20 20 H 0.97005 * 119.99814 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.59771 * 0.02562 * 12 11 9 22 22 H 1.08003 * 120.43914 * 179.97438 * 13 12 11 23 23 H 1.07994 * 120.44547 * 179.70231 * 18 14 13 24 24 H 1.07997 * 119.59711 * 180.25060 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3028 0.0000 0.0000 3 14 2.2369 1.6177 0.0000 4 1 2.4844 2.0464 -1.4000 5 1 1.4343 2.6527 0.7000 6 1 3.5344 1.4402 0.7000 7 6 2.0069 -1.2195 0.0005 8 1 3.0869 -1.2196 0.0001 9 6 1.3089 -2.4283 0.0016 10 8 0.0859 -2.4283 0.0016 11 6 2.0452 -3.7036 0.0016 12 6 1.3249 -4.9107 0.0022 13 6 1.9685 -6.1029 0.0027 14 6 3.4416 -6.1224 0.0021 15 7 4.0970 -7.2576 0.0031 16 6 5.3470 -7.2576 0.0031 17 8 6.5549 -7.2576 0.0032 18 6 4.1614 -4.8369 0.0073 19 6 3.4507 -3.6834 0.0011 20 1 -0.4850 0.8401 -0.0004 21 1 0.2451 -4.8875 0.0022 22 1 1.4090 -7.0267 0.0035 23 1 5.2411 -4.8144 0.0118 24 1 3.9705 -2.7367 0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238700092.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:15 Heat of formation + Delta-G solvation = -30.668155 kcal Electronic energy + Delta-G solvation = -13055.380509 eV Core-core repulsion = 10513.205729 eV Total energy + Delta-G solvation = -2542.174780 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.053 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.03637 -39.94726 -38.74743 -36.76284 -34.78306 -32.34735 -30.64336 -28.65729 -25.39832 -23.19463 -22.18034 -20.77215 -18.91728 -18.60057 -17.58489 -17.36384 -17.11365 -16.01983 -15.66890 -15.21112 -14.71409 -14.51719 -14.38893 -13.73924 -13.72224 -13.07269 -12.77434 -12.69000 -12.23104 -12.03152 -11.85581 -11.33019 -10.98745 -10.09806 -9.58578 -8.65912 -8.34956 -7.10420 -0.61062 -0.03941 0.58558 1.24039 1.39595 1.46182 1.56392 1.83888 2.20720 2.26320 2.84982 3.55539 3.77438 3.88284 4.21880 4.39711 4.46146 4.52385 5.08175 5.16411 5.23368 5.25296 5.46465 5.76201 5.92190 6.01843 6.66171 6.81956 6.86670 8.26692 8.49808 Molecular weight = 217.05amu Principal moments of inertia in cm(-1) A = 0.045310 B = 0.006955 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.812122 B = 4025.147553 C = 4633.117846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.022 3.978 3 Si 0.995 3.005 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.098 0.902 9 C 0.352 3.648 10 O -0.608 6.608 11 C -0.149 4.149 12 C -0.083 4.083 13 C -0.098 4.098 14 C 0.122 3.878 15 N -0.474 5.474 16 C 0.654 3.346 17 O -0.349 6.349 18 C -0.179 4.179 19 C -0.069 4.069 20 H 0.284 0.716 21 H 0.117 0.883 22 H 0.160 0.840 23 H 0.151 0.849 24 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.311 -7.164 0.016 12.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.198 4.198 3 Si 0.813 3.187 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.167 1.167 7 C -0.566 4.566 8 H 0.115 0.885 9 C 0.255 3.745 10 O -0.505 6.505 11 C -0.150 4.150 12 C -0.102 4.102 13 C -0.118 4.118 14 C 0.021 3.979 15 N -0.217 5.217 16 C 0.356 3.644 17 O -0.201 6.201 18 C -0.199 4.199 19 C -0.087 4.087 20 H 0.094 0.906 21 H 0.135 0.865 22 H 0.178 0.822 23 H 0.169 0.831 24 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.837 -7.670 0.021 12.474 hybrid contribution 0.321 0.988 -0.013 1.039 sum 10.158 -6.683 0.009 12.159 Atomic orbital electron populations 1.70006 1.10199 1.30078 1.30052 1.27388 0.95465 1.05739 0.91254 0.85054 0.79173 0.74609 0.79852 1.18237 1.19340 1.16738 1.21189 0.96465 0.92554 1.46411 0.88450 1.18287 0.88480 0.88625 0.79120 1.90588 1.16831 1.89930 1.53181 1.21738 0.95203 0.96662 1.01428 1.20829 1.00265 0.91631 0.97496 1.21969 0.89474 0.98069 1.02278 1.20072 0.92667 0.83486 1.01694 1.62216 0.94659 1.24945 1.39917 1.25961 0.87473 0.68034 0.82925 1.91066 1.05510 1.52651 1.70857 1.23126 0.99325 0.91055 1.06380 1.20949 0.92540 0.99044 0.96197 0.90555 0.86524 0.82235 0.83150 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.09 11.68 21.97 0.26 -44.83 14 2 C 0.02 1.18 5.51 85.55 0.47 1.65 14 3 Si 0.99 37.92 29.57 68.60 2.03 39.94 14 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 14 5 H -0.27 -9.85 7.11 99.48 0.71 -9.15 14 6 H -0.24 -8.60 7.11 99.48 0.71 -7.89 14 7 C -0.54 -29.14 8.77 23.23 0.20 -28.93 14 8 H 0.10 4.62 5.87 -2.91 -0.02 4.60 14 9 C 0.35 20.30 6.83 24.97 0.17 20.47 14 10 O -0.61 -40.30 14.76 -6.31 -0.09 -40.40 14 11 C -0.15 -6.86 5.91 -19.77 -0.12 -6.97 14 12 C -0.08 -3.41 9.45 22.20 0.21 -3.20 14 13 C -0.10 -3.12 10.29 24.02 0.25 -2.88 14 14 C 0.12 3.53 6.88 44.04 0.30 3.83 14 15 N -0.47 -11.47 10.07 -206.03 -2.07 -13.54 14 16 C 0.65 13.60 14.99 131.22 1.97 15.57 14 17 O -0.35 -7.54 17.99 -1.55 -0.03 -7.57 14 18 C -0.18 -5.30 9.44 24.03 0.23 -5.08 14 19 C -0.07 -2.57 9.29 22.20 0.21 -2.36 14 20 H 0.28 14.66 8.28 -92.70 -0.77 13.89 14 21 H 0.12 5.09 7.55 -2.91 -0.02 5.07 14 22 H 0.16 4.07 8.06 -2.91 -0.02 4.04 14 23 H 0.15 3.48 7.20 -2.91 -0.02 3.45 14 24 H 0.14 4.92 6.04 -2.91 -0.02 4.91 14 Total: -1.00 -69.25 235.75 5.23 -64.02 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.25 Total: 10.27 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 3.89 Total: -7.90 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -1.82 Total: -58.37 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.12 Total: -47.97 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.94 kcal Total: -69.25 5.23 -64.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238700092.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.355 kcal (2) G-P(sol) polarization free energy of solvation -69.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds