Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47327 * 179.97438 * 10 9 7 12 12 C 1.38721 * 119.75824 * 90.00205 * 11 10 9 13 13 C 1.37684 * 120.41907 * 179.97438 * 12 11 10 14 14 C 1.39590 * 119.72838 * 0.02562 * 13 12 11 15 15 N 1.36055 * 133.80065 * 180.02562 * 14 13 12 16 16 C 1.29900 * 108.79906 * 179.97438 * 15 14 13 17 17 O 1.34229 * 110.29002 * 0.02562 * 16 15 14 18 18 C 1.35115 * 108.16179 * 359.97438 * 17 16 15 19 19 C 1.37902 * 119.76409 * 269.72727 * 11 10 9 20 20 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 23 23 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 24 24 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 25 25 H 1.08001 * 119.78997 * 359.97438 * 12 11 10 26 26 H 1.07996 * 120.13131 * 180.02562 * 13 12 11 27 27 H 1.08000 * 124.86088 * 179.97438 * 16 15 14 28 28 H 1.08003 * 120.05969 * 359.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0091 12 6 1.1415 -5.5660 -1.1922 13 6 0.4535 -6.7586 -1.2022 14 6 0.1064 -7.3676 0.0049 15 7 -0.5531 -8.5135 0.3261 16 6 -0.6076 -8.6165 1.6198 17 8 -0.0011 -7.5670 2.1963 18 6 0.4617 -6.7583 1.2178 19 6 1.1602 -5.5605 1.2091 20 1 -0.4850 0.8401 0.0004 21 1 0.6281 -2.5552 0.8979 22 1 0.6206 -2.5586 -0.8820 23 1 2.8678 -3.6059 -0.8902 24 1 2.8760 -3.6028 0.8897 25 1 1.4102 -5.0937 -2.1255 26 1 0.1836 -7.2209 -2.1402 27 1 -1.0750 -9.4298 2.1552 28 1 1.4405 -5.0908 2.1404 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259044057.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = 21.324246 kcal Electronic energy + Delta-G solvation = -13439.238378 eV Core-core repulsion = 11035.151253 eV Total energy + Delta-G solvation = -2404.087125 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.03100 -38.17198 -34.81630 -33.59044 -31.67797 -30.38085 -28.52587 -25.23293 -23.50036 -22.36373 -21.63438 -20.46129 -17.59945 -17.20210 -16.49563 -16.35573 -15.37844 -14.51134 -14.40354 -13.77001 -13.28391 -12.70451 -12.60272 -12.17028 -11.85497 -11.48885 -11.36190 -10.93307 -10.86945 -10.62015 -10.33781 -9.91938 -9.63121 -9.18080 -8.55899 -8.38429 -8.01288 -6.03655 -4.07426 0.93492 1.49304 2.61652 2.75207 3.31232 3.36033 3.38030 3.90269 4.05603 4.42841 4.73543 5.14788 5.29196 5.32056 5.45039 5.49881 5.65047 6.10206 6.13213 6.24871 6.43334 6.50800 6.56266 6.79401 6.88826 7.02397 7.61612 7.71100 7.73354 7.94863 8.34328 8.99165 9.56958 11.07275 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.061994 B = 0.005658 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.548481 B = 4947.911077 C = 5068.188443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.080 4.080 11 C -0.024 4.024 12 C -0.115 4.115 13 C -0.062 4.062 14 C -0.004 4.004 15 N -0.483 5.483 16 C 0.210 3.790 17 O -0.221 6.221 18 C 0.017 3.983 19 C -0.103 4.103 20 H 0.262 0.738 21 H 0.018 0.982 22 H 0.020 0.980 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.250 0.750 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -13.897 1.584 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.117 4.117 11 C -0.024 4.024 12 C -0.134 4.134 13 C -0.081 4.081 14 C -0.114 4.114 15 N -0.212 5.212 16 C -0.021 4.021 17 O -0.112 6.112 18 C -0.033 4.033 19 C -0.122 4.122 20 H 0.072 0.928 21 H 0.037 0.963 22 H 0.038 0.962 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.156 0.844 26 H 0.149 0.851 27 H 0.266 0.734 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.489 -14.186 1.152 14.242 hybrid contribution 0.456 1.237 0.600 1.448 sum 0.945 -12.950 1.752 13.102 Atomic orbital electron populations 1.69960 1.06084 1.26841 1.50351 1.25027 0.94848 0.99295 0.95194 0.86637 0.79563 0.83025 0.78654 1.20172 1.21286 1.20207 1.21189 0.93055 0.90846 1.51249 0.92511 1.19101 0.93629 0.90315 0.97776 1.20917 0.98420 0.90338 1.02045 1.20282 0.95099 0.95894 0.91126 1.21066 0.99046 0.94603 0.98726 1.20254 0.97688 0.94869 0.95254 1.19751 1.03308 0.93420 0.94930 1.70514 1.18836 1.18538 1.13355 1.28073 0.95015 0.90672 0.88356 1.84496 1.59911 1.30465 1.36353 1.20345 1.01603 0.95138 0.86215 1.19790 1.00901 0.91761 0.99718 0.92848 0.96322 0.96183 0.91385 0.91672 0.84434 0.85082 0.73388 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.53 -14.46 9.11 -34.44 -0.31 -14.78 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.03 0.72 4.96 -27.88 -0.14 0.58 15 10 C -0.08 -1.56 5.27 -27.88 -0.15 -1.71 15 11 C -0.02 -0.42 5.14 -104.57 -0.54 -0.96 15 12 C -0.12 -1.85 9.67 -39.61 -0.38 -2.23 15 13 C -0.06 -0.96 10.10 -39.28 -0.40 -1.36 15 14 C 0.00 -0.06 7.24 -84.71 -0.61 -0.67 15 15 N -0.48 -7.37 11.34 -12.55 -0.14 -7.51 15 16 C 0.21 2.50 13.12 51.95 0.68 3.18 15 17 O -0.22 -3.27 10.77 3.62 0.04 -3.23 15 18 C 0.02 0.28 7.43 -38.64 -0.29 0.00 15 19 C -0.10 -1.77 9.69 -39.55 -0.38 -2.16 15 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.07 1.26 8.08 -51.93 -0.42 0.84 15 24 H 0.06 1.22 8.08 -51.93 -0.42 0.80 15 25 H 0.14 1.95 8.06 -52.49 -0.42 1.53 15 26 H 0.13 1.72 8.06 -52.49 -0.42 1.29 15 27 H 0.25 1.38 8.06 -52.49 -0.42 0.96 15 28 H 0.13 2.16 8.06 -52.48 -0.42 1.74 15 LS Contribution 254.16 15.07 3.83 3.83 Total: -1.00 -32.01 254.16 -6.09 -38.10 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -2.92 Total: -3.03 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.61 Total: -18.56 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.59 Total: -33.39 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.01 -6.09 -38.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259044057.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.426 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds