Wall clock time and date at job start Mon Mar 30 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.34243 * 125.03089 * 274.71946 * 10 9 7 12 12 C 1.46497 * 107.02347 * 179.85733 * 11 10 9 13 13 C 1.39670 * 133.94066 * 180.10745 * 12 11 10 14 14 C 1.38047 * 119.59958 * 180.31988 * 13 12 11 15 15 O 1.35987 * 119.86229 * 180.02562 * 14 13 12 16 16 C 1.39263 * 120.26788 * 359.97438 * 14 13 12 17 17 C 1.37676 * 120.62257 * 0.02562 * 16 14 13 18 18 C 1.39096 * 119.99549 * 0.02562 * 17 16 14 19 19 N 1.36805 * 125.03333 * 95.02522 * 10 9 7 20 20 H 0.96998 * 125.07134 * 359.97067 * 19 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.08001 * 126.48857 * 0.02562 * 11 10 9 25 25 H 1.07992 * 120.20455 * 0.34258 * 13 12 11 26 26 H 0.96697 * 114.00346 * 90.00176 * 15 14 13 27 27 H 1.08003 * 119.68806 * 180.02562 * 16 14 13 28 28 H 1.08007 * 120.00027 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7997 -4.1716 -1.0950 12 6 3.6793 -5.2525 -0.6433 13 6 4.5240 -6.1521 -1.2977 14 6 5.2326 -7.0806 -0.5619 15 8 6.0570 -7.9586 -1.1934 16 6 5.1076 -7.1210 0.8246 17 6 4.2779 -6.2391 1.4799 18 6 3.5545 -5.2966 0.7566 19 7 2.6659 -4.3053 1.1164 20 1 2.3910 -4.1061 2.0250 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.6416 -3.8564 -2.1158 25 1 4.6224 -6.1213 -2.3726 26 1 6.9641 -7.6406 -1.2984 27 1 5.6668 -7.8510 1.3910 28 1 4.1889 -6.2791 2.5555 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259397363.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:41 Heat of formation + Delta-G solvation = -21.855008 kcal Electronic energy + Delta-G solvation = -13450.462759 eV Core-core repulsion = 11044.503241 eV Total energy + Delta-G solvation = -2405.959518 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.12078 -39.36887 -36.45582 -35.13643 -32.85337 -31.73631 -29.45765 -28.33148 -25.40552 -23.10841 -22.42594 -21.11051 -18.95809 -18.71322 -18.45943 -16.87625 -16.30834 -16.12903 -15.47931 -15.18240 -14.80453 -14.34075 -14.07377 -13.86164 -13.60959 -13.20546 -12.68779 -12.56938 -12.54457 -12.11967 -11.87462 -11.47823 -11.24421 -10.66192 -10.60922 -8.90552 -8.57392 -8.22449 -6.38628 0.19047 0.59556 1.39108 1.40655 1.53272 1.88178 2.29174 2.41035 2.84803 3.07103 3.40892 3.85168 4.08516 4.26567 4.42892 4.53952 4.76390 4.79450 5.08533 5.12686 5.16211 5.25241 5.43365 5.57718 5.67535 5.82868 5.96779 6.06161 6.26462 6.70804 6.76450 6.99829 7.30922 8.84045 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.054418 B = 0.006089 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.409227 B = 4597.081383 C = 4692.635993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.077 3.923 10 C 0.124 3.876 11 C -0.249 4.249 12 C -0.108 4.108 13 C -0.118 4.118 14 C 0.073 3.927 15 O -0.505 6.505 16 C -0.129 4.129 17 C -0.110 4.110 18 C 0.066 3.934 19 N -0.588 5.588 20 H 0.421 0.579 21 H 0.268 0.732 22 H 0.016 0.984 23 H 0.026 0.974 24 H 0.138 0.862 25 H 0.131 0.869 26 H 0.405 0.595 27 H 0.158 0.842 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.292 -11.038 2.190 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.040 3.960 10 C 0.015 3.985 11 C -0.273 4.273 12 C -0.113 4.113 13 C -0.137 4.137 14 C 0.028 3.972 15 O -0.317 6.317 16 C -0.148 4.148 17 C -0.130 4.130 18 C -0.041 4.041 19 N -0.192 5.192 20 H 0.259 0.741 21 H 0.077 0.923 22 H 0.034 0.966 23 H 0.044 0.956 24 H 0.156 0.844 25 H 0.149 0.851 26 H 0.263 0.737 27 H 0.176 0.824 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.593 -11.238 2.272 14.949 hybrid contribution 0.208 1.483 0.179 1.508 sum 9.801 -9.755 2.450 14.043 Atomic orbital electron populations 1.70056 1.07504 1.28144 1.50750 1.25854 0.95758 1.02952 0.94336 0.85367 0.78769 0.78712 0.78015 1.19249 1.20152 1.20056 1.21310 0.93082 0.90905 1.51714 0.92809 1.17823 0.91878 0.88880 0.97448 1.20970 0.97567 0.94007 0.85975 1.21464 1.05624 1.01956 0.98231 1.19265 1.00568 0.98516 0.92946 1.20837 0.98076 0.94474 1.00361 1.18110 0.96677 0.91937 0.90525 1.84798 1.25346 1.42297 1.79282 1.21234 1.00489 0.99803 0.93291 1.20180 0.97808 0.94744 1.00312 1.18670 0.96747 0.94254 0.94426 1.41868 1.39119 1.29205 1.09003 0.74071 0.92341 0.96558 0.95572 0.84396 0.85139 0.73726 0.82440 0.83271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.60 13.29 21.45 0.28 -53.32 15 2 C 0.01 0.55 5.46 84.66 0.46 1.02 15 3 Si 0.97 43.16 29.54 68.60 2.03 45.19 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 7 C -0.53 -29.44 9.09 25.60 0.23 -29.21 15 8 H 0.05 2.99 7.74 -2.91 -0.02 2.96 15 9 C 0.08 3.98 5.48 29.10 0.16 4.14 15 10 C 0.12 5.50 6.27 40.87 0.26 5.76 15 11 C -0.25 -10.57 10.95 23.51 0.26 -10.31 15 12 C -0.11 -4.05 6.37 -20.20 -0.13 -4.18 15 13 C -0.12 -3.77 10.03 22.57 0.23 -3.54 15 14 C 0.07 1.97 6.69 22.47 0.15 2.12 15 15 O -0.51 -11.17 13.50 -93.40 -1.26 -12.43 15 16 C -0.13 -3.13 9.95 22.38 0.22 -2.90 15 17 C -0.11 -2.95 10.06 22.34 0.22 -2.72 15 18 C 0.07 2.29 7.27 38.98 0.28 2.57 15 19 N -0.59 -21.98 6.08 -175.83 -1.07 -23.05 15 20 H 0.42 13.56 8.96 -92.71 -0.83 12.73 15 21 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 22 H 0.02 0.85 8.14 -2.39 -0.02 0.83 15 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.14 5.70 8.06 -2.91 -0.02 5.67 15 25 H 0.13 3.79 8.06 -2.91 -0.02 3.77 15 26 H 0.40 4.81 9.06 -74.06 -0.67 4.14 15 27 H 0.16 2.77 8.06 -2.91 -0.02 2.75 15 28 H 0.15 3.04 8.06 -2.91 -0.02 3.02 15 Total: -1.00 -65.33 253.94 2.02 -63.30 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.31 Total: 17.57 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 2.35 Total: -37.27 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -0.78 Total: -76.36 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.26 Total: -12.43 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -65.33 2.02 -63.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259397363.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.449 kcal (2) G-P(sol) polarization free energy of solvation -65.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds