Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86801 * 119.99415 * 2 1 4 4 H 1.48502 * 109.47322 * 270.00298 * 3 2 1 5 5 H 1.48504 * 109.47295 * 30.00701 * 3 2 1 6 6 H 1.48501 * 109.46865 * 150.00097 * 3 2 1 7 7 C 1.40103 * 120.00651 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.40724 * 119.99597 * 359.97438 * 7 2 1 10 10 N 1.34117 * 119.57546 * 180.24768 * 9 7 2 11 11 C 1.31543 * 119.59817 * 180.29882 * 10 9 7 12 12 C 1.40945 * 118.81696 * 359.45686 * 11 10 9 13 13 C 1.46935 * 120.41787 * 180.29676 * 12 11 10 14 14 C 1.38064 * 126.91962 * 180.02562 * 13 12 11 15 15 N 1.33364 * 107.60263 * 180.02562 * 14 13 12 16 16 C 1.30836 * 109.73584 * 0.02562 * 15 14 13 17 17 N 1.34863 * 109.38729 * 359.72825 * 16 15 14 18 18 H 0.96997 * 126.44329 * 180.30741 * 17 16 15 19 19 N 1.33812 * 119.15718 * 0.27743 * 12 11 10 20 20 N 1.28758 * 120.32521 * 0.02562 * 19 12 11 21 21 H 0.96992 * 120.01014 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.59512 * 179.73679 * 11 10 9 23 23 H 1.08006 * 126.19594 * 0.04220 * 14 13 12 24 24 H 1.08009 * 125.30641 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4882 2.0466 -1.4001 5 1 1.4382 2.6527 0.7002 6 1 3.5384 1.4403 0.7000 7 6 2.0076 -1.2132 -0.0005 8 1 3.0876 -1.2132 -0.0010 9 6 1.3041 -2.4320 -0.0005 10 7 1.9833 -3.5884 0.0040 11 6 1.3261 -4.7279 -0.0020 12 6 -0.0831 -4.6995 -0.0013 13 6 -0.8524 -5.9513 -0.0013 14 6 -2.2271 -6.0800 -0.0012 15 7 -2.5102 -7.3832 -0.0006 16 6 -1.4005 -8.0764 0.0002 17 7 -0.3469 -7.2346 -0.0059 18 1 0.5903 -7.4847 -0.0109 19 7 -0.7113 -3.5180 -0.0003 20 7 -0.0352 -2.4222 -0.0005 21 1 -0.4851 0.8399 0.0004 22 1 1.8568 -5.6686 -0.0028 23 1 -2.9433 -5.2716 -0.0017 24 1 -1.3381 -9.1547 0.0011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259479394.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = 93.932931 kcal Electronic energy + Delta-G solvation = -13384.828318 eV Core-core repulsion = 10912.642149 eV Total energy + Delta-G solvation = -2472.186169 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.70851 -41.32749 -36.19776 -35.09146 -33.90061 -32.92930 -30.37302 -28.00278 -25.87487 -24.73654 -22.43723 -21.80931 -20.14881 -19.37839 -18.62780 -17.18955 -16.23788 -16.12274 -15.86859 -15.36287 -14.96653 -14.64277 -14.25459 -13.32540 -13.18534 -13.06801 -12.38220 -12.17899 -12.06868 -11.81317 -11.65949 -11.02662 -11.00148 -10.65608 -9.48513 -9.07662 -8.72189 -6.96650 0.04266 0.45516 1.31401 1.38937 1.57751 1.62125 2.13276 2.16063 2.25120 2.63796 3.53563 3.56651 3.69824 3.78317 3.96472 4.26549 4.45751 4.70398 4.79176 4.95954 5.21513 5.37966 5.76380 5.84584 6.20651 6.31713 6.64287 6.84268 7.16356 8.10938 8.48975 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.082655 B = 0.006809 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.678062 B = 4111.277557 C = 4440.111018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.011 3.989 3 Si 1.013 2.987 4 H -0.256 1.256 5 H -0.261 1.261 6 H -0.249 1.249 7 C -0.387 4.387 8 H 0.109 0.891 9 C 0.269 3.731 10 N -0.550 5.550 11 C 0.147 3.853 12 C -0.088 4.088 13 C 0.048 3.952 14 C -0.023 4.023 15 N -0.531 5.531 16 C 0.199 3.801 17 N -0.549 5.549 18 H 0.436 0.564 19 N -0.197 5.197 20 N -0.317 5.317 21 H 0.296 0.704 22 H 0.192 0.808 23 H 0.157 0.843 24 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 -7.560 -0.014 8.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.214 4.214 3 Si 0.830 3.170 4 H -0.180 1.180 5 H -0.185 1.185 6 H -0.172 1.172 7 C -0.423 4.423 8 H 0.127 0.873 9 C 0.035 3.965 10 N -0.272 5.272 11 C -0.038 4.038 12 C -0.237 4.237 13 C -0.070 4.070 14 C -0.174 4.174 15 N -0.250 5.250 16 C -0.084 4.084 17 N -0.155 5.155 18 H 0.278 0.722 19 N -0.052 5.052 20 N -0.179 5.179 21 H 0.108 0.892 22 H 0.209 0.791 23 H 0.175 0.825 24 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 2.305 -6.701 -0.004 7.087 hybrid contribution 1.638 0.085 -0.017 1.640 sum 3.943 -6.616 -0.021 7.702 Atomic orbital electron populations 1.70126 1.09448 1.31382 1.24334 1.27397 0.95988 1.05536 0.92517 0.84742 0.78755 0.73411 0.80075 1.18030 1.18514 1.17184 1.19838 0.95944 0.88301 1.38194 0.87304 1.21673 0.89354 0.92865 0.92594 1.69205 1.40010 0.98961 1.18987 1.24085 0.91191 0.98188 0.90316 1.20486 0.93258 0.92811 1.17165 1.18991 0.93155 0.83439 1.11459 1.22645 0.92590 0.94013 1.08167 1.69998 1.29722 1.03805 1.21470 1.25869 0.80254 0.99193 1.03048 1.43027 1.11481 1.04398 1.56554 0.72227 1.73673 1.33211 0.95702 1.02611 1.75020 1.06583 1.14428 1.21835 0.89221 0.79148 0.82518 0.72376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.13 11.42 21.85 0.25 -37.88 14 2 C 0.01 0.54 5.50 85.31 0.47 1.01 14 3 Si 1.01 34.86 29.56 68.60 2.03 36.89 14 4 H -0.26 -8.43 7.11 99.48 0.71 -7.73 14 5 H -0.26 -8.49 7.11 99.48 0.71 -7.78 14 6 H -0.25 -8.14 7.11 99.48 0.71 -7.43 14 7 C -0.39 -20.38 9.35 23.33 0.22 -20.16 14 8 H 0.11 5.30 7.85 -2.91 -0.02 5.28 14 9 C 0.27 15.14 7.41 134.58 1.00 16.13 14 10 N -0.55 -27.65 10.45 -192.54 -2.01 -29.66 14 11 C 0.15 6.20 11.01 85.40 0.94 7.14 14 12 C -0.09 -3.99 6.85 41.78 0.29 -3.70 14 13 C 0.05 1.79 7.03 40.42 0.28 2.07 14 14 C -0.02 -0.91 11.74 84.42 0.99 0.08 14 15 N -0.53 -17.87 11.20 -198.18 -2.22 -20.09 14 16 C 0.20 4.68 13.00 180.22 2.34 7.02 14 17 N -0.55 -13.74 6.07 -186.77 -1.13 -14.88 14 18 H 0.44 7.24 8.29 -92.71 -0.77 6.47 14 19 N -0.20 -10.69 11.44 -48.09 -0.55 -11.24 14 20 N -0.32 -18.67 9.05 -56.49 -0.51 -19.18 14 21 H 0.30 13.60 8.29 -92.71 -0.77 12.83 14 22 H 0.19 5.62 7.38 -2.91 -0.02 5.59 14 23 H 0.16 6.44 8.06 -2.91 -0.02 6.42 14 24 H 0.26 2.82 8.06 -2.91 -0.02 2.79 14 Total: -1.00 -72.88 230.32 2.87 -70.01 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.49 Total: 16.44 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.53 Total: 9.60 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -6.18 Total: -132.93 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -72.88 2.87 -70.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259479394.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.939 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds