Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99603 * 2 1 4 4 H 1.48497 * 109.47224 * 269.99373 * 3 2 1 5 5 H 1.48497 * 109.47665 * 30.00095 * 3 2 1 6 6 H 1.48507 * 109.46694 * 149.99904 * 3 2 1 7 7 C 1.37876 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47035 * 179.97438 * 9 7 2 11 11 C 1.38431 * 120.04578 * 265.00022 * 10 9 7 12 12 C 1.38254 * 119.83036 * 179.97438 * 11 10 9 13 13 C 1.37989 * 120.37257 * 359.97438 * 12 11 10 14 14 C 1.39319 * 120.12671 * 0.26216 * 13 12 11 15 15 C 1.37638 * 120.04088 * 84.98181 * 10 9 7 16 16 C 1.51136 * 132.85546 * 0.02562 * 15 10 9 17 17 C 1.51393 * 104.06836 * 180.02562 * 16 15 10 18 18 O 1.21290 * 126.43444 * 179.97438 * 17 16 15 19 19 N 1.34369 * 107.12254 * 359.97438 * 17 16 15 20 20 H 0.96999 * 120.00150 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47143 * 59.99654 * 9 7 2 22 22 H 1.09002 * 109.47174 * 300.00398 * 9 7 2 23 23 H 1.08008 * 120.08462 * 359.95187 * 11 10 9 24 24 H 1.07995 * 119.81885 * 180.02562 * 12 11 10 25 25 H 1.08002 * 119.93231 * 179.97438 * 13 12 11 26 26 H 1.09007 * 110.50840 * 298.64655 * 16 15 10 27 27 H 1.08995 * 110.51371 * 61.35590 * 16 15 10 28 28 H 0.96998 * 123.86984 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6014 -4.2392 -1.1932 12 6 3.5006 -5.2894 -1.1881 13 6 4.0310 -5.7480 0.0004 14 6 3.6586 -5.1578 1.2062 15 6 2.7574 -4.1005 1.1875 16 6 2.5642 -3.6809 2.6265 17 6 3.4588 -4.6203 3.4070 18 8 3.6117 -4.6359 4.6101 19 7 4.0515 -5.4333 2.5165 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.1892 -3.8839 -2.1262 24 1 3.7903 -5.7529 -2.1195 25 1 4.7325 -6.5691 -0.0038 26 1 2.8799 -2.6473 2.7685 27 1 1.5236 -3.8079 2.9250 28 1 4.6788 -6.1330 2.7571 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259550794.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -15.410442 kcal Electronic energy + Delta-G solvation = -13836.781805 eV Core-core repulsion = 11431.101744 eV Total energy + Delta-G solvation = -2405.680061 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.00337 -38.11213 -35.46629 -33.52909 -31.90004 -29.88279 -27.96967 -26.61421 -23.32022 -21.64814 -20.77132 -20.39634 -17.04853 -16.39252 -16.29699 -15.58629 -15.35158 -14.56239 -14.32252 -13.53994 -13.06404 -12.86584 -12.45132 -12.10914 -12.04343 -11.58994 -11.19766 -11.09424 -10.61898 -10.49446 -10.40185 -9.86983 -9.59119 -9.48286 -8.47966 -8.02263 -7.60209 -6.10316 -4.14633 1.62988 1.88165 2.79519 3.27486 3.28145 3.34560 3.38093 4.24809 4.43704 4.55484 5.00683 5.24310 5.27677 5.46653 5.70046 5.84225 5.93335 5.95923 6.32790 6.51363 6.53774 6.85835 6.92036 7.04185 7.10526 7.40846 7.55394 7.71189 7.85258 8.22017 8.23505 8.90468 9.49921 10.99538 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.009372 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.407845 B = 2986.783957 C = 3594.249837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.046 3.954 10 C 0.014 3.986 11 C -0.141 4.141 12 C -0.091 4.091 13 C -0.164 4.164 14 C 0.127 3.873 15 C -0.136 4.136 16 C -0.109 4.109 17 C 0.528 3.472 18 O -0.522 6.522 19 N -0.661 5.661 20 H 0.263 0.737 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.125 0.875 24 H 0.121 0.879 25 H 0.114 0.886 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.734 -9.560 -0.637 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.010 3.990 10 C 0.014 3.986 11 C -0.160 4.160 12 C -0.110 4.110 13 C -0.185 4.185 14 C 0.031 3.969 15 C -0.139 4.139 16 C -0.148 4.148 17 C 0.317 3.683 18 O -0.398 6.398 19 N -0.304 5.304 20 H 0.073 0.927 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.143 0.857 24 H 0.139 0.861 25 H 0.132 0.868 26 H 0.146 0.854 27 H 0.137 0.863 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.586 -9.351 0.088 10.892 hybrid contribution 0.844 0.552 -0.006 1.009 sum 6.430 -8.799 0.081 10.898 Atomic orbital electron populations 1.69947 1.06018 1.26946 1.50155 1.24988 0.94863 0.99222 0.95050 0.86554 0.79871 0.83195 0.78229 1.20550 1.21118 1.19793 1.20990 0.93020 0.89656 1.51473 0.92426 1.18381 0.92521 0.89418 0.98715 1.19927 0.94687 0.94169 0.89841 1.21059 0.99810 0.97103 0.98054 1.20766 0.96818 0.96811 0.96566 1.20075 1.05172 1.03346 0.89953 1.18158 0.97308 0.97076 0.84318 1.19562 1.01349 0.98163 0.94829 1.20965 1.01324 1.01103 0.91387 1.20882 0.80159 0.81134 0.86120 1.90758 1.65047 1.71376 1.12597 1.43706 1.44928 1.35716 1.06011 0.92745 0.95017 0.94971 0.85654 0.86116 0.86775 0.85416 0.86298 0.75776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.64 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 7 C -0.51 -13.60 9.09 -34.44 -0.31 -13.91 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 15 9 C 0.05 1.12 4.99 -29.04 -0.14 0.97 15 10 C 0.01 0.29 5.06 -104.77 -0.53 -0.24 15 11 C -0.14 -2.47 9.70 -39.50 -0.38 -2.85 15 12 C -0.09 -1.32 10.02 -39.67 -0.40 -1.72 15 13 C -0.16 -2.33 10.07 -39.27 -0.40 -2.73 15 14 C 0.13 2.04 7.11 -83.69 -0.60 1.44 15 15 C -0.14 -2.52 6.13 -104.37 -0.64 -3.16 15 16 C -0.11 -1.91 6.56 -28.48 -0.19 -2.10 15 17 C 0.53 9.01 8.71 -10.83 -0.09 8.91 15 18 O -0.52 -10.18 18.03 5.55 0.10 -10.08 15 19 N -0.66 -9.68 5.88 -9.70 -0.06 -9.73 15 20 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 21 H 0.03 0.80 8.05 -51.93 -0.42 0.38 15 22 H 0.03 0.81 7.97 -51.93 -0.41 0.39 15 23 H 0.13 2.09 8.06 -52.48 -0.42 1.66 15 24 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 25 H 0.11 1.28 8.06 -52.49 -0.42 0.85 15 26 H 0.13 2.33 8.14 -51.93 -0.42 1.91 15 27 H 0.12 1.97 8.14 -51.93 -0.42 1.55 15 28 H 0.41 4.72 8.96 -40.82 -0.37 4.36 15 LS Contribution 252.44 15.07 3.80 3.80 Total: -1.00 -29.81 252.44 -7.07 -36.88 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -2.85 Total: 1.70 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -3.78 Total: -13.84 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.68 Total: -34.37 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.10 Total: -10.08 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.81 -7.07 -36.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259550794.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.472 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds