Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99603 * 2 1 4 4 H 1.48497 * 109.47224 * 269.99373 * 3 2 1 5 5 H 1.48497 * 109.47665 * 30.00095 * 3 2 1 6 6 H 1.48507 * 109.46694 * 149.99904 * 3 2 1 7 7 C 1.37876 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47035 * 179.97438 * 9 7 2 11 11 C 1.38431 * 120.04578 * 265.00022 * 10 9 7 12 12 C 1.38254 * 119.83036 * 179.97438 * 11 10 9 13 13 C 1.37989 * 120.37257 * 359.97438 * 12 11 10 14 14 C 1.39319 * 120.12671 * 0.26216 * 13 12 11 15 15 C 1.37638 * 120.04088 * 84.98181 * 10 9 7 16 16 C 1.51136 * 132.85546 * 0.02562 * 15 10 9 17 17 C 1.51393 * 104.06836 * 180.02562 * 16 15 10 18 18 O 1.21290 * 126.43444 * 179.97438 * 17 16 15 19 19 N 1.34369 * 107.12254 * 359.97438 * 17 16 15 20 20 H 0.96999 * 120.00150 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47143 * 59.99654 * 9 7 2 22 22 H 1.09002 * 109.47174 * 300.00398 * 9 7 2 23 23 H 1.08008 * 120.08462 * 359.95187 * 11 10 9 24 24 H 1.07995 * 119.81885 * 180.02562 * 12 11 10 25 25 H 1.08002 * 119.93231 * 179.97438 * 13 12 11 26 26 H 1.09007 * 110.50840 * 298.64655 * 16 15 10 27 27 H 1.08995 * 110.51371 * 61.35590 * 16 15 10 28 28 H 0.96998 * 123.86984 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6014 -4.2392 -1.1932 12 6 3.5006 -5.2894 -1.1881 13 6 4.0310 -5.7480 0.0004 14 6 3.6586 -5.1578 1.2062 15 6 2.7574 -4.1005 1.1875 16 6 2.5642 -3.6809 2.6265 17 6 3.4588 -4.6203 3.4070 18 8 3.6117 -4.6359 4.6101 19 7 4.0515 -5.4333 2.5165 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.1892 -3.8839 -2.1262 24 1 3.7903 -5.7529 -2.1195 25 1 4.7325 -6.5691 -0.0038 26 1 2.8799 -2.6473 2.7685 27 1 1.5236 -3.8079 2.9250 28 1 4.6788 -6.1330 2.7571 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259550794.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -34.089884 kcal Electronic energy + Delta-G solvation = -13837.591807 eV Core-core repulsion = 11431.101744 eV Total energy + Delta-G solvation = -2406.490062 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.34097 -39.50372 -36.87812 -35.32938 -33.51830 -31.38778 -29.39876 -28.25437 -25.14512 -23.02483 -22.09331 -21.82184 -18.57296 -18.28624 -17.65641 -16.98422 -16.70177 -16.38479 -15.73112 -14.93851 -14.56429 -14.45351 -13.99937 -13.74729 -13.40184 -13.26686 -12.86493 -12.74244 -12.39399 -12.24873 -11.87515 -11.35277 -11.29074 -11.23734 -10.57518 -9.44159 -8.90873 -8.17928 -6.29785 0.29519 0.57364 1.40977 1.42151 1.44068 1.52979 2.03510 2.41398 2.97988 3.13970 3.19464 3.64250 4.02675 4.28536 4.45837 4.50779 4.54492 4.69287 4.91550 5.17241 5.20838 5.32771 5.41102 5.57044 5.69504 5.77067 5.83554 6.04220 6.14415 6.25968 6.82991 6.96194 7.38651 8.91311 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.009372 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.407845 B = 2986.783957 C = 3594.249837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.056 3.944 10 C -0.018 4.018 11 C -0.152 4.152 12 C -0.078 4.078 13 C -0.143 4.143 14 C 0.127 3.873 15 C -0.157 4.157 16 C -0.113 4.113 17 C 0.535 3.465 18 O -0.547 6.547 19 N -0.641 5.641 20 H 0.265 0.735 21 H 0.008 0.992 22 H 0.007 0.993 23 H 0.125 0.875 24 H 0.164 0.836 25 H 0.159 0.841 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.967 -11.062 -1.474 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.072 0.928 9 C 0.019 3.981 10 C -0.019 4.019 11 C -0.170 4.170 12 C -0.096 4.096 13 C -0.164 4.164 14 C 0.030 3.970 15 C -0.160 4.160 16 C -0.152 4.152 17 C 0.324 3.676 18 O -0.426 6.426 19 N -0.284 5.284 20 H 0.073 0.927 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.143 0.857 24 H 0.181 0.819 25 H 0.177 0.823 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 7.844 -10.883 -0.768 13.437 hybrid contribution 0.159 0.929 0.204 0.964 sum 8.003 -9.954 -0.564 12.784 Atomic orbital electron populations 1.70064 1.07524 1.27815 1.51412 1.25819 0.95641 1.02743 0.94790 0.85554 0.78635 0.79014 0.78536 1.19650 1.20828 1.19248 1.21309 0.93005 0.91053 1.50660 0.92754 1.18093 0.92897 0.90860 0.96249 1.19623 0.95847 0.94511 0.91889 1.21185 1.00746 0.98173 0.96944 1.21181 0.94755 0.95047 0.98592 1.20593 1.04158 1.03108 0.88513 1.18277 0.96817 0.96517 0.85354 1.19577 1.02534 0.99578 0.94316 1.20940 1.01718 1.00722 0.91852 1.20602 0.80026 0.81240 0.85742 1.90746 1.66009 1.72225 1.13619 1.43422 1.44509 1.35450 1.05060 0.92659 0.97350 0.97520 0.85700 0.81859 0.82304 0.86883 0.86328 0.73527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.29 21.45 0.28 -54.20 15 2 C 0.01 0.47 5.46 84.65 0.46 0.93 15 3 Si 0.96 43.39 29.54 68.60 2.03 45.42 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 7 C -0.52 -28.52 9.09 25.60 0.23 -28.29 15 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 15 9 C 0.06 2.83 4.99 29.10 0.15 2.97 15 10 C -0.02 -0.74 5.06 -19.96 -0.10 -0.84 15 11 C -0.15 -5.09 9.70 22.32 0.22 -4.88 15 12 C -0.08 -1.91 10.02 22.21 0.22 -1.69 15 13 C -0.14 -3.35 10.07 22.47 0.23 -3.12 15 14 C 0.13 3.69 7.11 38.34 0.27 3.97 15 15 C -0.16 -5.78 6.13 -19.70 -0.12 -5.90 15 16 C -0.11 -4.07 6.56 29.46 0.19 -3.88 15 17 C 0.53 17.84 8.71 87.94 0.77 18.60 15 18 O -0.55 -21.08 18.03 -3.06 -0.06 -21.14 15 19 N -0.64 -17.09 5.88 -303.22 -1.78 -18.87 15 20 H 0.26 14.66 8.31 -92.71 -0.77 13.89 15 21 H 0.01 0.44 8.05 -2.39 -0.02 0.42 15 22 H 0.01 0.35 7.97 -2.39 -0.02 0.33 15 23 H 0.13 4.09 8.06 -2.91 -0.02 4.07 15 24 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 25 H 0.16 2.40 8.06 -2.91 -0.02 2.38 15 26 H 0.11 4.34 8.14 -2.38 -0.02 4.32 15 27 H 0.12 4.16 8.14 -2.39 -0.02 4.14 15 28 H 0.42 8.34 8.96 -92.71 -0.83 7.51 15 Total: -1.00 -65.74 252.44 3.34 -62.41 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.35 Total: 8.51 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 2.52 Total: -22.13 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.50 Total: -73.07 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.06 Total: -21.14 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.74 3.34 -62.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259550794.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.317 kcal (2) G-P(sol) polarization free energy of solvation -65.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds