Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86802 * 119.99504 * 2 1 4 4 H 1.48497 * 109.47186 * 239.99902 * 3 2 1 5 5 H 1.48504 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47053 * 119.99960 * 3 2 1 7 7 C 1.40166 * 120.00603 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00437 * 180.02562 * 7 2 1 9 9 C 1.40800 * 119.99867 * 359.97438 * 7 2 1 10 10 N 1.34058 * 119.59422 * 180.02562 * 9 7 2 11 11 C 1.31596 * 119.59515 * 180.02562 * 10 9 7 12 12 C 1.40792 * 118.83029 * 359.97438 * 11 10 9 13 13 C 1.47171 * 120.41384 * 179.97438 * 12 11 10 14 14 N 1.31879 * 125.85622 * 0.03874 * 13 12 11 15 15 C 1.33264 * 109.24580 * 179.97438 * 14 13 12 16 16 C 1.35546 * 108.42046 * 0.02562 * 15 14 13 17 17 N 1.36471 * 107.05563 * 359.76908 * 16 15 14 18 18 H 0.96996 * 126.50097 * 180.24095 * 17 16 15 19 19 N 1.33734 * 119.18133 * 359.97438 * 12 11 10 20 20 N 1.28767 * 120.33207 * 0.02562 * 19 12 11 21 21 H 0.96995 * 120.00318 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.58699 * 179.97438 * 11 10 9 23 23 H 1.08002 * 125.79478 * 180.02562 * 15 14 13 24 24 H 1.07994 * 126.47488 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6966 -1.2125 5 1 1.2753 2.7465 0.0006 6 1 3.0942 1.6966 1.2126 7 6 2.0075 -1.2138 -0.0005 8 1 3.0875 -1.2138 -0.0001 9 6 1.3036 -2.4332 -0.0005 10 7 1.9822 -3.5894 -0.0005 11 6 1.3243 -4.7291 -0.0011 12 6 -0.0833 -4.7005 -0.0010 13 6 -0.8540 -5.9543 -0.0022 14 7 -0.3479 -7.1721 -0.0025 15 6 -1.3412 -8.0606 -0.0030 16 6 -2.5178 -7.3876 -0.0036 17 7 -2.2175 -6.0563 0.0019 18 1 -2.8511 -5.3220 0.0062 19 7 -0.7115 -3.5199 0.0000 20 7 -0.0358 -2.4237 0.0005 21 1 -0.4850 0.8400 0.0004 22 1 1.8548 -5.6698 -0.0015 23 1 -1.2280 -9.1346 -0.0030 24 1 -3.5062 -7.8227 -0.0037 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259552844.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = 116.187106 kcal Electronic energy + Delta-G solvation = -13390.911292 eV Core-core repulsion = 10919.690136 eV Total energy + Delta-G solvation = -2471.221155 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.30864 -39.46052 -34.38910 -33.18300 -31.94062 -31.58910 -28.74772 -26.49652 -23.90291 -23.03504 -21.00521 -20.20227 -18.27616 -18.01234 -16.66530 -15.37565 -14.61205 -14.55002 -14.31549 -13.55026 -13.47282 -13.12727 -12.96940 -11.62759 -11.50647 -11.35021 -10.64493 -10.44083 -10.26889 -9.95955 -9.85013 -9.61718 -9.61151 -8.95260 -7.59930 -7.59438 -6.98929 -5.10068 1.78121 2.40162 2.74184 2.89303 2.92907 2.98854 3.61957 3.64963 3.72493 4.40605 4.81589 5.45013 5.49759 5.51742 5.70917 5.71559 5.90049 6.22073 6.48678 6.68325 6.84115 7.07802 7.19472 7.75906 7.84837 8.07862 8.13653 8.57100 8.78285 9.78952 10.34218 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.082550 B = 0.006857 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.106458 B = 4082.381008 C = 4411.644721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.054 3.946 3 Si 0.931 3.069 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.354 4.354 8 H 0.103 0.897 9 C 0.303 3.697 10 N -0.541 5.541 11 C 0.184 3.816 12 C -0.108 4.108 13 C 0.314 3.686 14 N -0.498 5.498 15 C -0.027 4.027 16 C -0.079 4.079 17 N -0.557 5.557 18 H 0.423 0.577 19 N -0.176 5.176 20 N -0.273 5.273 21 H 0.288 0.712 22 H 0.158 0.842 23 H 0.165 0.835 24 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 -3.992 0.002 5.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.176 4.176 3 Si 0.753 3.247 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.390 4.390 8 H 0.121 0.879 9 C 0.070 3.930 10 N -0.263 5.263 11 C -0.001 4.001 12 C -0.255 4.255 13 C 0.052 3.948 14 N -0.219 5.219 15 C -0.178 4.178 16 C -0.215 4.215 17 N -0.159 5.159 18 H 0.262 0.738 19 N -0.036 5.036 20 N -0.137 5.137 21 H 0.099 0.901 22 H 0.175 0.825 23 H 0.182 0.818 24 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.948 -3.062 0.006 4.251 hybrid contribution -0.610 0.186 0.001 0.638 sum -3.558 -2.875 0.007 4.575 Atomic orbital electron populations 1.70012 1.07583 1.29881 1.23605 1.26337 0.95279 1.02215 0.93793 0.85971 0.79851 0.78328 0.80522 1.18294 1.19655 1.18300 1.19453 0.95499 0.87489 1.36552 0.87887 1.21228 0.88873 0.91813 0.91087 1.69313 1.39333 0.98328 1.19281 1.23411 0.90602 0.97379 0.88707 1.19742 0.93049 0.90834 1.21907 1.20705 0.79373 0.92337 1.02361 1.70315 1.31977 0.97673 1.21972 1.22245 0.88165 0.99196 1.08169 1.22721 1.00840 0.83336 1.14601 1.43339 1.08600 1.08016 1.55916 0.73840 1.73665 1.33078 0.95132 1.01751 1.74985 1.06364 1.12998 1.19375 0.90067 0.82481 0.81778 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.13 11.43 55.56 0.63 -16.50 14 2 C 0.05 1.26 5.50 -17.33 -0.10 1.17 14 3 Si 0.93 16.96 29.56 -169.99 -5.02 11.94 14 4 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 14 6 H -0.26 -4.65 7.11 56.52 0.40 -4.24 14 7 C -0.35 -9.10 9.36 -37.89 -0.35 -9.45 14 8 H 0.10 2.47 7.85 -52.49 -0.41 2.06 14 9 C 0.30 8.34 7.41 -157.65 -1.17 7.17 14 10 N -0.54 -14.09 10.45 -12.23 -0.13 -14.22 14 11 C 0.18 4.38 10.97 -16.69 -0.18 4.19 14 12 C -0.11 -2.58 6.85 -82.45 -0.56 -3.14 14 13 C 0.31 6.56 7.88 -154.34 -1.22 5.34 14 14 N -0.50 -9.92 10.92 -11.23 -0.12 -10.04 14 15 C -0.03 -0.43 11.85 -17.89 -0.21 -0.64 14 16 C -0.08 -1.14 12.04 -16.45 -0.20 -1.34 14 17 N -0.56 -9.56 6.20 -10.54 -0.07 -9.62 14 18 H 0.42 6.56 8.96 -40.82 -0.37 6.20 14 19 N -0.18 -4.53 11.62 33.46 0.39 -4.14 14 20 N -0.27 -7.63 9.05 30.80 0.28 -7.35 14 21 H 0.29 6.31 8.29 -40.82 -0.34 5.97 14 22 H 0.16 3.30 7.90 -52.49 -0.41 2.89 14 23 H 0.16 2.04 8.06 -52.49 -0.42 1.62 14 24 H 0.17 1.70 8.06 -52.49 -0.42 1.28 14 LS Contribution 231.53 15.07 3.49 3.49 Total: -1.00 -30.28 231.53 -5.71 -35.99 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -1.17 Total: 7.15 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -3.99 Total: 3.30 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.99 Total: -61.87 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.02 Total: 11.94 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.28 -5.71 -35.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552844.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.176 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds