Wall clock time and date at job start Mon Mar 30 2020 02:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86800 * 120.00121 * 2 1 4 4 H 1.48499 * 109.47629 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46885 * 299.99933 * 3 2 1 6 6 H 1.48503 * 109.47165 * 59.99697 * 3 2 1 7 7 C 1.40373 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.39690 * 119.99830 * 0.02562 * 7 2 1 10 10 N 1.37748 * 127.55663 * 0.15382 * 9 7 2 11 11 H 0.97004 * 125.92108 * 359.97438 * 10 9 7 12 12 N 1.28565 * 108.15160 * 180.24768 * 10 9 7 13 13 N 1.28362 * 111.76227 * 359.75736 * 12 10 9 14 14 C 1.34142 * 109.64148 * 359.97438 * 13 12 10 15 15 C 1.47598 * 127.21705 * 179.97438 * 14 13 12 16 16 C 1.39920 * 120.14727 * 335.02310 * 15 14 13 17 17 N 1.31897 * 119.82846 * 179.97438 * 16 15 14 18 18 C 1.32295 * 120.12271 * 359.97438 * 17 16 15 19 19 C 1.38531 * 120.29134 * 0.27948 * 18 17 16 20 20 N 1.31951 * 120.17231 * 359.42899 * 19 18 17 21 21 H 0.96996 * 119.99987 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.08588 * 359.95451 * 16 15 14 23 23 H 1.08002 * 119.85105 * 179.97438 * 18 17 16 24 24 H 1.07996 * 119.91268 * 179.69849 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3465 -0.0006 5 1 1.8817 2.3964 -1.2126 6 1 1.8817 2.3965 1.2125 7 6 2.0084 -1.2156 0.0005 8 1 3.0884 -1.2156 0.0001 9 6 1.3100 -2.4254 0.0005 10 7 -0.0555 -2.6066 -0.0029 11 1 -0.7230 -1.9027 -0.0054 12 7 -0.2919 -3.8703 0.0037 13 7 0.7924 -4.5573 0.0063 14 6 1.8495 -3.7314 0.0006 15 6 3.2766 -4.1079 0.0016 16 6 3.6767 -5.3447 0.5193 17 7 4.9536 -5.6750 0.5166 18 6 5.8544 -4.8398 0.0253 19 6 5.4644 -3.6119 -0.4838 20 7 4.1895 -3.2720 -0.4921 21 1 -0.4850 0.8400 -0.0004 22 1 2.9419 -6.0270 0.9204 23 1 6.8989 -5.1146 0.0256 24 1 6.2054 -2.9328 -0.8788 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259680658.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:08 Heat of formation + Delta-G solvation = 90.855386 kcal Electronic energy + Delta-G solvation = -13674.816792 eV Core-core repulsion = 11202.497170 eV Total energy + Delta-G solvation = -2472.319621 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.93621 -41.46046 -36.20456 -35.13374 -33.80684 -32.56493 -31.00545 -27.85005 -25.34385 -25.16949 -23.06219 -21.89123 -20.22811 -18.21895 -17.93511 -17.53324 -16.97091 -16.30841 -16.10043 -15.35071 -15.03087 -14.55206 -13.82276 -13.64524 -13.14802 -13.12624 -12.34360 -12.21830 -12.10706 -11.77584 -11.62209 -11.40321 -11.06190 -10.38679 -9.79948 -9.40038 -9.13969 -6.72758 -0.09683 0.36324 1.06627 1.38850 1.57885 1.66422 1.98513 2.11953 2.75230 2.89967 3.14928 3.36009 3.54717 3.78775 4.11090 4.39958 4.59379 4.78384 4.83673 5.01528 5.25449 5.34226 5.67010 5.98011 6.27521 6.47830 6.58507 7.06881 7.09319 7.95614 8.27587 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.028394 B = 0.011469 C = 0.008302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.894888 B = 2440.842510 C = 3372.017720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.031 3.969 3 Si 1.014 2.986 4 H -0.251 1.251 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.416 4.416 8 H 0.121 0.879 9 C 0.200 3.800 10 N -0.450 5.450 11 H 0.448 0.552 12 N -0.185 5.185 13 N -0.261 5.261 14 C -0.177 4.177 15 C 0.198 3.802 16 C 0.032 3.968 17 N -0.448 5.448 18 C 0.016 3.984 19 C 0.063 3.937 20 N -0.467 5.467 21 H 0.311 0.689 22 H 0.160 0.840 23 H 0.209 0.791 24 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 3.331 -0.201 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.186 4.186 3 Si 0.833 3.167 4 H -0.174 1.174 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.451 4.451 8 H 0.138 0.862 9 C 0.074 3.926 10 N -0.182 5.182 11 H 0.302 0.698 12 N -0.163 5.163 13 N -0.133 5.133 14 C -0.317 4.317 15 C 0.061 3.939 16 C -0.129 4.129 17 N -0.163 5.163 18 C -0.145 4.145 19 C -0.099 4.099 20 N -0.184 5.184 21 H 0.124 0.876 22 H 0.178 0.822 23 H 0.225 0.775 24 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.704 2.240 -0.193 8.026 hybrid contribution 0.011 1.669 -0.019 1.669 sum 7.716 3.908 -0.213 8.652 Atomic orbital electron populations 1.68741 1.09474 1.33214 1.35060 1.27278 0.95750 1.05917 0.89688 0.84624 0.79335 0.73476 0.79303 1.17371 1.18408 1.18490 1.19572 0.96893 0.87670 1.41000 0.86169 1.20136 0.82739 0.95410 0.94267 1.45493 1.07742 1.06384 1.58538 0.69790 1.77236 1.20362 0.90274 1.28395 1.74190 0.95392 1.28557 1.15121 1.19956 0.91642 0.89928 1.30129 1.19224 0.90236 0.91363 0.93085 1.23485 0.93730 0.95917 0.99739 1.68348 1.01502 1.33510 1.12894 1.24333 1.01559 0.91735 0.96841 1.24450 0.92767 0.97047 0.95661 1.68526 1.02626 1.33308 1.13930 0.87615 0.82241 0.77476 0.77740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -37.07 10.81 21.90 0.24 -36.83 14 2 C 0.03 1.34 5.50 85.39 0.47 1.81 14 3 Si 1.01 33.01 29.56 68.60 2.03 35.04 14 4 H -0.25 -8.03 7.11 99.48 0.71 -7.33 14 5 H -0.26 -8.07 7.11 99.48 0.71 -7.36 14 6 H -0.26 -8.08 7.11 99.48 0.71 -7.37 14 7 C -0.42 -20.55 9.01 23.14 0.21 -20.34 14 8 H 0.12 5.80 6.50 -2.91 -0.02 5.78 14 9 C 0.20 10.73 6.86 39.32 0.27 11.00 14 10 N -0.45 -23.77 6.72 -50.56 -0.34 -24.11 14 11 H 0.45 22.40 6.45 -219.94 -1.42 20.98 14 12 N -0.18 -10.01 13.27 37.02 0.49 -9.52 14 13 N -0.26 -14.13 12.30 -47.21 -0.58 -14.71 14 14 C -0.18 -9.33 7.05 42.02 0.30 -9.04 14 15 C 0.20 9.11 6.69 41.81 0.28 9.39 14 16 C 0.03 1.32 10.94 85.09 0.93 2.25 14 17 N -0.45 -15.78 10.49 -193.91 -2.03 -17.81 14 18 C 0.02 0.44 11.22 84.69 0.95 1.39 14 19 C 0.06 1.88 11.22 84.74 0.95 2.83 14 20 N -0.47 -19.32 8.78 -184.37 -1.62 -20.93 14 21 H 0.31 12.04 8.29 -92.71 -0.77 11.27 14 22 H 0.16 6.48 8.06 -2.91 -0.02 6.46 14 23 H 0.21 3.49 8.06 -2.91 -0.02 3.47 14 24 H 0.21 4.02 8.06 -2.91 -0.02 4.00 14 Total: -1.00 -62.08 227.15 2.38 -59.70 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -0.16 Total: 29.90 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 4.36 Total: -0.71 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -3.84 Total: -123.93 kcal Atomic # 14 Polarization: 33.01 SS G_CDS: 2.03 Total: 35.04 kcal Total: -62.08 2.38 -59.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259680658.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.555 kcal (2) G-P(sol) polarization free energy of solvation -62.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds