Wall clock time and date at job start Mon Mar 30 2020 02:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86802 * 120.00218 * 2 1 4 4 H 1.48507 * 109.46834 * 274.98032 * 3 2 1 5 5 H 1.48501 * 109.47127 * 34.97730 * 3 2 1 6 6 H 1.48501 * 109.46887 * 154.98092 * 3 2 1 7 7 C 1.40086 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00068 * 186.23887 * 7 2 1 9 9 C 1.41554 * 120.00137 * 6.24623 * 7 2 1 10 10 C 1.41017 * 120.60300 * 173.76243 * 9 7 2 11 11 C 1.38443 * 118.37380 * 180.02562 * 10 9 7 12 12 N 1.32240 * 119.38213 * 359.97438 * 11 10 9 13 13 C 1.33069 * 121.18901 * 0.02562 * 12 11 10 14 14 C 1.47591 * 119.11035 * 180.27099 * 13 12 11 15 15 C 1.35907 * 126.59610 * 359.44855 * 14 13 12 16 16 N 1.33982 * 107.49858 * 179.87243 * 15 14 13 17 17 C 1.30449 * 108.92721 * 0.39169 * 16 15 14 18 18 O 1.33852 * 109.06772 * 359.75597 * 17 16 15 19 19 N 1.32478 * 121.78105 * 0.02562 * 13 12 11 20 20 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 21 21 H 1.08006 * 120.81487 * 0.04668 * 10 9 7 22 22 H 1.07998 * 120.31198 * 180.02562 * 11 10 9 23 23 H 1.08004 * 126.24968 * 359.97343 * 15 14 13 24 24 H 1.08002 * 125.46410 * 179.77517 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3831 2.1071 -1.3949 5 1 1.4949 2.6200 0.8026 6 1 3.5871 1.4119 0.5921 7 6 2.0072 -1.2132 0.0005 8 1 3.0824 -1.2160 0.1022 9 6 1.3056 -2.4355 -0.1323 10 6 2.0041 -3.6534 -0.2648 11 6 1.2717 -4.8213 -0.3923 12 7 -0.0494 -4.7627 -0.3857 13 6 -0.6870 -3.6016 -0.2593 14 6 -2.1629 -3.5901 -0.2517 15 6 -2.9822 -4.6676 -0.3735 16 7 -4.2445 -4.2226 -0.3135 17 6 -4.2298 -2.9261 -0.1697 18 8 -2.9599 -2.5052 -0.1281 19 7 -0.0330 -2.4563 -0.1354 20 1 -0.4850 0.8401 -0.0004 21 1 3.0839 -3.6745 -0.2665 22 1 1.7746 -5.7715 -0.4953 23 1 -2.6723 -5.6951 -0.4946 24 1 -5.1023 -2.2939 -0.0956 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259683970.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:09 Heat of formation + Delta-G solvation = 66.863061 kcal Electronic energy + Delta-G solvation = -13626.158502 eV Core-core repulsion = 11120.505744 eV Total energy + Delta-G solvation = -2505.652758 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.63293 -38.93601 -34.28977 -34.10342 -31.68658 -31.49238 -28.70582 -26.48906 -23.56540 -22.55910 -21.52614 -20.66324 -18.06143 -17.06330 -16.05261 -15.94589 -15.01528 -14.83107 -14.06651 -13.64572 -13.15663 -13.09536 -12.68450 -12.38064 -11.47562 -11.29049 -10.93207 -10.81957 -10.38276 -10.19612 -9.93644 -9.29725 -9.20994 -8.68170 -7.66267 -7.64011 -6.64208 -4.93054 1.54083 2.69223 2.76962 2.96908 3.00674 3.07997 3.23417 3.37857 3.77208 4.60399 4.66636 5.17361 5.53332 5.65328 5.75768 6.09911 6.22979 6.51439 6.58571 6.75092 6.87071 6.93895 7.00911 7.58489 7.85713 8.20462 8.30740 8.55596 8.79295 9.81477 10.04682 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.032171 B = 0.010265 C = 0.007808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.143568 B = 2726.969607 C = 3585.148345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.412 4.412 8 H 0.093 0.907 9 C 0.263 3.737 10 C -0.317 4.317 11 C 0.139 3.861 12 N -0.604 5.604 13 C 0.365 3.635 14 C 0.054 3.946 15 C -0.015 4.015 16 N -0.497 5.497 17 C 0.149 3.851 18 O -0.171 6.171 19 N -0.490 5.490 20 H 0.279 0.721 21 H 0.113 0.887 22 H 0.138 0.862 23 H 0.188 0.812 24 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.819 -0.303 -0.159 1.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.164 4.164 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.446 4.446 8 H 0.111 0.889 9 C 0.135 3.865 10 C -0.345 4.345 11 C -0.019 4.019 12 N -0.330 5.330 13 C 0.096 3.904 14 C -0.002 4.002 15 C -0.158 4.158 16 N -0.226 5.226 17 C -0.077 4.077 18 O -0.053 6.053 19 N -0.211 5.211 20 H 0.091 0.909 21 H 0.131 0.869 22 H 0.155 0.845 23 H 0.205 0.795 24 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.474 -0.406 -0.170 3.502 hybrid contribution 1.872 1.157 0.021 2.201 sum -1.602 0.752 -0.149 1.776 Atomic orbital electron populations 1.70085 1.07347 1.28676 1.25862 1.26198 0.95032 1.01598 0.93527 0.86189 0.80501 0.80204 0.79322 1.19209 1.19834 1.18232 1.19743 0.94990 0.89058 1.40772 0.88939 1.18742 0.87494 0.92440 0.87808 1.22513 1.00233 0.95112 1.16626 1.22204 0.89047 0.97115 0.93492 1.67827 1.10386 1.28012 1.26731 1.19329 0.88583 0.86874 0.95630 1.20680 0.90045 0.83970 1.05498 1.23255 0.86537 1.00494 1.05520 1.70301 1.23931 1.10028 1.18356 1.27966 0.85997 0.91645 1.02062 1.84625 1.17342 1.35882 1.67454 1.69521 1.09101 1.24608 1.17865 0.90948 0.86910 0.84510 0.79454 0.73977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.08 11.55 55.55 0.64 -17.44 14 2 C 0.06 1.57 5.49 -17.35 -0.10 1.48 14 3 Si 0.91 17.63 29.56 -169.99 -5.03 12.60 14 4 H -0.27 -5.11 7.11 56.52 0.40 -4.70 14 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 14 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 14 7 C -0.41 -10.52 9.19 -37.63 -0.35 -10.86 14 8 H 0.09 2.16 7.86 -52.49 -0.41 1.74 14 9 C 0.26 7.04 6.57 -84.66 -0.56 6.49 14 10 C -0.32 -7.44 9.94 -38.45 -0.38 -7.82 14 11 C 0.14 3.08 11.29 -17.30 -0.20 2.88 14 12 N -0.60 -14.47 10.09 -11.34 -0.11 -14.58 14 13 C 0.36 9.38 7.58 -156.96 -1.19 8.19 14 14 C 0.05 1.24 7.21 -36.60 -0.26 0.98 14 15 C -0.02 -0.31 11.59 -17.45 -0.20 -0.51 14 16 N -0.50 -9.23 11.27 -14.70 -0.17 -9.39 14 17 C 0.15 2.50 13.21 52.18 0.69 3.19 14 18 O -0.17 -3.69 10.79 4.41 0.05 -3.65 14 19 N -0.49 -13.63 8.00 -9.21 -0.07 -13.70 14 20 H 0.28 6.50 8.29 -40.82 -0.34 6.16 14 21 H 0.11 2.33 8.06 -52.48 -0.42 1.91 14 22 H 0.14 2.43 8.06 -52.49 -0.42 2.01 14 23 H 0.19 3.43 8.06 -52.48 -0.42 3.01 14 24 H 0.24 2.60 8.06 -52.49 -0.42 2.17 14 LS Contribution 233.03 15.07 3.51 3.51 Total: -1.00 -30.60 233.03 -4.96 -35.56 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -1.24 Total: 3.08 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.54 Total: 4.01 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.29 Total: -55.12 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: 0.05 Total: -3.65 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.60 -4.96 -35.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683970.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.424 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds