Wall clock time and date at job start Mon Mar 30 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 O 1.42903 * 109.47006 * 59.71863 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.34244 * 126.49655 * 265.01965 * 12 9 7 14 14 N 1.36831 * 109.92680 * 180.02562 * 13 12 9 15 15 H 0.96994 * 125.06570 * 179.97438 * 14 13 12 16 16 C 1.37686 * 109.87261 * 0.02562 * 14 13 12 17 17 C 1.39127 * 133.50286 * 180.02562 * 16 14 13 18 18 C 1.37755 * 119.77711 * 179.97438 * 17 16 14 19 19 C 1.38833 * 120.66448 * 359.97438 * 18 17 16 20 20 C 1.36624 * 120.52904 * 0.02562 * 19 18 17 21 21 C 1.39634 * 119.76477 * 359.69567 * 20 19 18 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 0.96697 * 113.99557 * 60.00730 * 11 9 7 24 24 H 1.07993 * 125.03702 * 0.02562 * 13 12 9 25 25 H 1.07999 * 120.11142 * 359.94342 * 17 16 14 26 26 H 1.07998 * 119.66494 * 179.97438 * 18 17 16 27 27 H 1.08004 * 119.72990 * 180.02562 * 19 18 17 28 28 H 1.08001 * 120.11223 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 8 0.4294 -2.5696 -1.1725 12 6 2.2302 -3.6447 -0.0104 13 6 2.6779 -4.3076 -1.0884 14 7 3.5555 -5.2845 -0.7039 15 1 4.0096 -5.8942 -1.3062 16 6 3.6968 -5.2740 0.6657 17 6 4.4462 -6.0353 1.5570 18 6 4.3732 -5.7758 2.9079 19 6 3.5587 -4.7605 3.3909 20 6 2.8144 -4.0007 2.5333 21 6 2.8777 -4.2427 1.1596 22 1 -0.4850 0.8401 -0.0004 23 1 0.9216 -2.5207 -2.0034 24 1 2.3885 -4.1006 -2.1080 25 1 5.0827 -6.8274 1.1911 26 1 4.9554 -6.3681 3.5982 27 1 3.5132 -4.5698 4.4530 28 1 2.1834 -3.2123 2.9163 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259698660.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:38 Heat of formation + Delta-G solvation = 4.253995 kcal Electronic energy + Delta-G solvation = -13943.457770 eV Core-core repulsion = 11538.630423 eV Total energy + Delta-G solvation = -2404.827347 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.63750 -36.52223 -35.42688 -32.09741 -31.42131 -29.02801 -28.38064 -26.36323 -22.78937 -22.31830 -21.19739 -18.70893 -17.42672 -16.84320 -15.80311 -14.99933 -14.54275 -14.28218 -13.88180 -13.54188 -13.34535 -12.79537 -12.64116 -11.88888 -11.24054 -11.19218 -11.04821 -10.93276 -10.84883 -10.46050 -10.18636 -9.29757 -8.95463 -8.53101 -8.26682 -7.68913 -6.95456 -5.95299 -4.13953 1.65056 2.11988 3.32162 3.36283 3.37622 3.46700 3.66247 4.40204 4.49599 5.20895 5.27468 5.42539 5.47044 5.63018 5.92035 5.94604 6.14909 6.35288 6.43339 6.56459 6.69937 6.91745 7.11795 7.28073 7.41073 7.67984 7.83112 7.91127 8.11808 8.22834 8.89074 9.37783 9.61602 11.06995 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034314 B = 0.009111 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.790863 B = 3072.370939 C = 3439.650803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.289 3.711 10 H 0.065 0.935 11 O -0.561 6.561 12 C -0.141 4.141 13 C 0.017 3.983 14 N -0.603 5.603 15 H 0.407 0.593 16 C 0.092 3.908 17 C -0.143 4.143 18 C -0.106 4.106 19 C -0.164 4.164 20 C -0.053 4.053 21 C -0.097 4.097 22 H 0.261 0.739 23 H 0.343 0.657 24 H 0.163 0.837 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.240 -9.636 1.098 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.595 4.595 8 H 0.074 0.926 9 C 0.231 3.769 10 H 0.083 0.917 11 O -0.363 6.363 12 C -0.147 4.147 13 C -0.106 4.106 14 N -0.207 5.207 15 H 0.242 0.758 16 C -0.016 4.016 17 C -0.164 4.164 18 C -0.126 4.126 19 C -0.184 4.184 20 C -0.071 4.071 21 C -0.102 4.102 22 H 0.071 0.929 23 H 0.187 0.813 24 H 0.180 0.820 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.603 -9.617 1.436 11.753 hybrid contribution 1.302 0.711 -0.710 1.644 sum 7.905 -8.906 0.725 11.930 Atomic orbital electron populations 1.70067 1.05878 1.26543 1.47291 1.25046 0.94693 0.99009 0.93969 0.86721 0.79693 0.83137 0.78740 1.20222 1.21223 1.20125 1.21535 0.93164 0.90623 1.54190 0.92625 1.17849 0.85989 0.86994 0.86102 0.91736 1.86612 1.38032 1.96333 1.15334 1.22032 1.02379 1.00213 0.90103 1.21380 0.96595 0.93220 0.99426 1.41619 1.41540 1.32524 1.04992 0.75797 1.18302 1.00543 0.99046 0.83726 1.19863 1.02595 1.01512 0.92446 1.20655 0.99554 0.98345 0.94008 1.20525 1.00326 0.98362 0.99182 1.20429 0.97465 0.97925 0.91318 1.19187 1.00063 0.97313 0.93653 0.92921 0.81335 0.81951 0.87149 0.86597 0.86652 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.40 12.83 55.43 0.71 -24.69 15 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 15 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.56 -15.46 8.75 -34.44 -0.30 -15.76 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.29 7.49 3.35 -29.03 -0.10 7.39 15 10 H 0.07 1.84 8.14 -51.93 -0.42 1.42 15 11 O -0.56 -14.39 12.51 -35.23 -0.44 -14.83 15 12 C -0.14 -3.13 5.39 -102.71 -0.55 -3.68 15 13 C 0.02 0.31 11.15 -16.73 -0.19 0.12 15 14 N -0.60 -9.66 6.07 -10.65 -0.06 -9.72 15 15 H 0.41 4.83 8.96 -40.82 -0.37 4.47 15 16 C 0.09 1.65 7.28 -83.99 -0.61 1.04 15 17 C -0.14 -2.19 10.08 -39.43 -0.40 -2.59 15 18 C -0.11 -1.56 10.01 -39.54 -0.40 -1.95 15 19 C -0.16 -2.64 9.97 -39.94 -0.40 -3.03 15 20 C -0.05 -1.02 10.05 -39.64 -0.40 -1.42 15 21 C -0.10 -2.02 6.35 -105.14 -0.67 -2.69 15 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 23 H 0.34 7.59 8.09 45.56 0.37 7.96 15 24 H 0.16 2.56 7.40 -52.49 -0.39 2.17 15 25 H 0.11 1.35 8.06 -52.49 -0.42 0.93 15 26 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 27 H 0.12 1.54 8.06 -52.48 -0.42 1.12 15 28 H 0.12 2.41 8.06 -52.49 -0.42 1.99 15 LS Contribution 250.92 15.07 3.78 3.78 Total: -1.00 -32.08 250.92 -7.18 -39.26 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -2.04 Total: 10.35 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -4.10 Total: -20.47 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.65 Total: -34.41 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.44 Total: -14.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.08 -7.18 -39.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698660.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.511 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds