Wall clock time and date at job start Mon Mar 30 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 O 1.42903 * 109.47006 * 59.71863 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.34244 * 126.49655 * 265.01965 * 12 9 7 14 14 N 1.36831 * 109.92680 * 180.02562 * 13 12 9 15 15 H 0.96994 * 125.06570 * 179.97438 * 14 13 12 16 16 C 1.37686 * 109.87261 * 0.02562 * 14 13 12 17 17 C 1.39127 * 133.50286 * 180.02562 * 16 14 13 18 18 C 1.37755 * 119.77711 * 179.97438 * 17 16 14 19 19 C 1.38833 * 120.66448 * 359.97438 * 18 17 16 20 20 C 1.36624 * 120.52904 * 0.02562 * 19 18 17 21 21 C 1.39634 * 119.76477 * 359.69567 * 20 19 18 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 0.96697 * 113.99557 * 60.00730 * 11 9 7 24 24 H 1.07993 * 125.03702 * 0.02562 * 13 12 9 25 25 H 1.07999 * 120.11142 * 359.94342 * 17 16 14 26 26 H 1.07998 * 119.66494 * 179.97438 * 18 17 16 27 27 H 1.08004 * 119.72990 * 180.02562 * 19 18 17 28 28 H 1.08001 * 120.11223 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 8 0.4294 -2.5696 -1.1725 12 6 2.2302 -3.6447 -0.0104 13 6 2.6779 -4.3076 -1.0884 14 7 3.5555 -5.2845 -0.7039 15 1 4.0096 -5.8942 -1.3062 16 6 3.6968 -5.2740 0.6657 17 6 4.4462 -6.0353 1.5570 18 6 4.3732 -5.7758 2.9079 19 6 3.5587 -4.7605 3.3909 20 6 2.8144 -4.0007 2.5333 21 6 2.8777 -4.2427 1.1596 22 1 -0.4850 0.8401 -0.0004 23 1 0.9216 -2.5207 -2.0034 24 1 2.3885 -4.1006 -2.1080 25 1 5.0827 -6.8274 1.1911 26 1 4.9554 -6.3681 3.5982 27 1 3.5132 -4.5698 4.4530 28 1 2.1834 -3.2123 2.9163 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259698660.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:38 Heat of formation + Delta-G solvation = -18.581359 kcal Electronic energy + Delta-G solvation = -13944.447985 eV Core-core repulsion = 11538.630423 eV Total energy + Delta-G solvation = -2405.817562 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.02210 -38.00258 -37.22580 -34.25559 -32.88548 -30.44819 -29.84236 -28.27951 -24.75960 -23.64484 -22.50699 -20.29740 -19.08370 -18.71390 -17.14655 -16.67420 -16.24458 -16.14065 -15.34338 -15.03195 -14.70863 -14.52113 -14.43537 -13.33180 -13.19019 -12.97668 -12.79412 -12.46599 -12.37204 -12.10899 -11.85127 -11.23717 -10.76799 -10.44253 -10.18924 -9.02660 -8.46097 -8.04467 -6.36294 0.31924 0.80435 1.39714 1.42029 1.50333 1.92948 2.37540 2.43279 3.09320 3.12921 3.96077 4.09172 4.27847 4.33163 4.41111 4.56553 4.68563 4.86355 5.04474 5.12251 5.22165 5.56860 5.66676 5.72298 5.78810 5.93565 6.05766 6.13004 6.36406 6.73416 6.90283 7.34078 7.56148 8.92704 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034314 B = 0.009111 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.790863 B = 3072.370939 C = 3439.650803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.566 4.566 8 H 0.048 0.952 9 C 0.297 3.703 10 H 0.017 0.983 11 O -0.575 6.575 12 C -0.199 4.199 13 C 0.043 3.957 14 N -0.584 5.584 15 H 0.430 0.570 16 C 0.081 3.919 17 C -0.133 4.133 18 C -0.102 4.102 19 C -0.154 4.154 20 C -0.095 4.095 21 C -0.135 4.135 22 H 0.262 0.738 23 H 0.358 0.642 24 H 0.190 0.810 25 H 0.152 0.848 26 H 0.161 0.839 27 H 0.141 0.859 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.853 -11.181 0.902 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.175 4.175 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.604 4.604 8 H 0.066 0.934 9 C 0.239 3.761 10 H 0.034 0.966 11 O -0.380 6.380 12 C -0.206 4.206 13 C -0.082 4.082 14 N -0.189 5.189 15 H 0.270 0.730 16 C -0.027 4.027 17 C -0.154 4.154 18 C -0.121 4.121 19 C -0.173 4.173 20 C -0.113 4.113 21 C -0.140 4.140 22 H 0.071 0.929 23 H 0.203 0.797 24 H 0.206 0.794 25 H 0.169 0.831 26 H 0.178 0.822 27 H 0.159 0.841 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.253 -11.198 1.228 14.578 hybrid contribution 0.514 1.076 -0.604 1.337 sum 9.767 -10.123 0.624 14.080 Atomic orbital electron populations 1.70203 1.07533 1.27463 1.48597 1.25882 0.95488 1.02645 0.93461 0.85635 0.78419 0.78640 0.79016 1.19084 1.20590 1.19816 1.21787 0.92845 0.92000 1.53770 0.93373 1.17367 0.85748 0.88485 0.84454 0.96567 1.86525 1.38861 1.96484 1.16087 1.21648 1.04606 1.01556 0.92763 1.21628 0.95051 0.92009 0.99492 1.41512 1.40565 1.31928 1.04890 0.73022 1.18584 1.00713 0.98855 0.84587 1.20381 1.01504 1.01250 0.92236 1.21180 0.98681 0.97545 0.94696 1.20880 0.98848 0.97541 1.00015 1.20476 0.99603 0.99368 0.91895 1.19449 1.01558 0.99007 0.93995 0.92863 0.79684 0.79360 0.83082 0.82191 0.84145 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.03 12.83 21.45 0.28 -54.76 15 2 C 0.03 1.57 5.40 84.66 0.46 2.03 15 3 Si 0.96 44.61 29.54 68.60 2.03 46.64 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 7 C -0.57 -32.68 8.75 25.60 0.22 -32.46 15 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 15 9 C 0.30 16.35 3.35 29.10 0.10 16.45 15 10 H 0.02 1.03 8.14 -2.38 -0.02 1.01 15 11 O -0.58 -30.74 12.51 -148.98 -1.86 -32.60 15 12 C -0.20 -9.14 5.39 -18.63 -0.10 -9.24 15 13 C 0.04 1.56 11.15 83.00 0.93 2.49 15 14 N -0.58 -17.23 6.07 -187.61 -1.14 -18.37 15 15 H 0.43 8.59 8.96 -92.71 -0.83 7.76 15 16 C 0.08 2.73 7.28 39.03 0.28 3.02 15 17 C -0.13 -3.52 10.08 22.37 0.23 -3.30 15 18 C -0.10 -2.57 10.01 22.30 0.22 -2.35 15 19 C -0.15 -4.70 9.97 22.03 0.22 -4.48 15 20 C -0.09 -3.80 10.05 22.23 0.22 -3.58 15 21 C -0.14 -5.76 6.35 -20.20 -0.13 -5.89 15 22 H 0.26 15.12 8.31 -92.70 -0.77 14.35 15 23 H 0.36 16.19 8.09 -74.06 -0.60 15.59 15 24 H 0.19 5.58 7.40 -2.91 -0.02 5.56 15 25 H 0.15 2.78 8.06 -2.91 -0.02 2.75 15 26 H 0.16 2.66 8.06 -2.91 -0.02 2.64 15 27 H 0.14 3.45 8.06 -2.91 -0.02 3.43 15 28 H 0.10 4.25 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -72.91 250.92 1.71 -71.20 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.24 Total: 25.19 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 2.65 Total: -37.30 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -0.86 Total: -73.12 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.86 Total: -32.60 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.91 1.71 -71.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698660.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.618 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds