Wall clock time and date at job start Mon Mar 30 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 O 1.42905 * 109.46592 * 59.99738 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.34236 * 125.03306 * 274.69595 * 12 9 7 14 14 C 1.46493 * 106.99884 * 179.86263 * 13 12 9 15 15 C 1.39620 * 134.03575 * 180.11107 * 14 13 12 16 16 C 1.36620 * 119.76906 * 180.35314 * 15 14 13 17 17 C 1.38841 * 120.52600 * 359.95892 * 16 15 14 18 18 C 1.37747 * 120.66381 * 0.02562 * 17 16 15 19 19 C 1.39129 * 119.77989 * 0.02562 * 18 17 16 20 20 N 1.36831 * 125.03537 * 94.99907 * 12 9 7 21 21 H 0.96998 * 125.06177 * 0.02562 * 20 12 9 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 0.96693 * 113.99902 * 60.00946 * 11 9 7 24 24 H 1.08000 * 126.50575 * 359.97438 * 13 12 9 25 25 H 1.08004 * 120.12005 * 0.33591 * 15 14 13 26 26 H 1.08000 * 119.73976 * 179.97438 * 16 15 14 27 27 H 1.07999 * 119.66854 * 180.02562 * 17 16 15 28 28 H 1.08003 * 120.11099 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5750 -1.1666 12 6 2.2304 -3.6445 0.0018 13 6 2.8004 -4.1722 -1.0930 14 6 3.6796 -5.2527 -0.6395 15 6 4.5251 -6.1536 -1.2900 16 6 5.2260 -7.0728 -0.5618 17 6 5.1051 -7.1181 0.8206 18 6 4.2770 -6.2386 1.4825 19 6 3.5530 -5.2949 0.7608 20 7 2.6658 -4.3045 1.1185 21 1 2.3899 -4.1050 2.0268 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9224 -2.5299 -1.9975 24 1 2.6424 -3.8585 -2.1143 25 1 4.6245 -6.1240 -2.3650 26 1 5.8795 -7.7697 -1.0655 27 1 5.6659 -7.8502 1.3825 28 1 4.1900 -6.2815 2.5582 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259751260.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:41 Heat of formation + Delta-G solvation = -27.928849 kcal Electronic energy + Delta-G solvation = -13806.673149 eV Core-core repulsion = 11400.450249 eV Total energy + Delta-G solvation = -2406.222900 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.18235 -38.58142 -37.19330 -34.42142 -32.79810 -30.85939 -30.01324 -28.01145 -25.19115 -23.09781 -22.40754 -21.22418 -19.49991 -18.91465 -17.60965 -16.81485 -15.92056 -15.58683 -15.54862 -15.29162 -14.85553 -14.67277 -14.32303 -14.10006 -13.65552 -12.67309 -12.60233 -12.49131 -12.30672 -11.95243 -11.75595 -11.66314 -10.74801 -10.65041 -10.39997 -9.06746 -8.75429 -8.52907 -6.57029 0.24243 0.74760 1.51767 1.59178 1.78157 1.80620 2.19352 2.52798 3.02697 3.09199 3.79381 3.89202 3.94258 4.21097 4.32068 4.48838 4.58747 4.68059 4.75642 5.04278 5.15503 5.21680 5.58110 5.65420 5.71615 5.87748 5.96837 6.04447 6.28302 6.45347 6.66330 6.97095 7.36531 8.67573 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.047720 B = 0.007278 C = 0.007064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.618163 B = 3846.450850 C = 3962.821285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.009 4.009 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.647 4.647 8 H 0.045 0.955 9 C 0.270 3.730 10 H 0.037 0.963 11 O -0.579 6.579 12 C 0.082 3.918 13 C -0.233 4.233 14 C -0.131 4.131 15 C -0.089 4.089 16 C -0.148 4.148 17 C -0.103 4.103 18 C -0.139 4.139 19 C 0.070 3.930 20 N -0.590 5.590 21 H 0.418 0.582 22 H 0.270 0.730 23 H 0.370 0.630 24 H 0.143 0.857 25 H 0.133 0.867 26 H 0.153 0.847 27 H 0.159 0.841 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.909 -11.435 1.000 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.212 4.212 3 Si 0.941 3.059 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.063 0.937 9 C 0.211 3.789 10 H 0.055 0.945 11 O -0.384 6.384 12 C -0.027 4.027 13 C -0.257 4.257 14 C -0.136 4.136 15 C -0.108 4.108 16 C -0.167 4.167 17 C -0.121 4.121 18 C -0.160 4.160 19 C -0.037 4.037 20 N -0.194 5.194 21 H 0.255 0.745 22 H 0.080 0.920 23 H 0.218 0.782 24 H 0.161 0.839 25 H 0.151 0.849 26 H 0.170 0.830 27 H 0.176 0.824 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.157 -9.823 1.546 13.518 hybrid contribution 0.030 -1.294 0.054 1.295 sum 9.187 -11.116 1.600 14.510 Atomic orbital electron populations 1.70766 1.07846 1.31386 1.44803 1.27297 0.96411 1.06161 0.91332 0.82904 0.74071 0.71132 0.77817 1.19759 1.19869 1.20568 1.22559 0.94275 0.92480 1.59131 0.93651 1.17947 0.86481 0.88768 0.85679 0.94509 1.86456 1.38862 1.96397 1.16685 1.21515 0.99113 0.95348 0.86763 1.21421 1.04646 1.01632 0.98000 1.19534 1.01599 0.99465 0.92993 1.20546 0.95483 0.94294 1.00438 1.20991 1.01388 0.99903 0.94379 1.21202 0.97792 0.98419 0.94731 1.20384 0.99390 0.96161 1.00053 1.18750 0.96306 0.93816 0.94850 1.41723 1.39566 1.29369 1.08728 0.74484 0.91975 0.78197 0.83948 0.84919 0.82972 0.82388 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.91 13.53 21.45 0.29 -54.62 15 2 C -0.01 -0.50 5.40 84.65 0.46 -0.05 15 3 Si 1.12 49.15 29.90 68.60 2.05 51.20 15 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 7 C -0.65 -35.82 8.75 25.60 0.22 -35.60 15 8 H 0.05 2.55 7.74 -2.91 -0.02 2.53 15 9 C 0.27 13.82 2.95 29.10 0.09 13.90 15 10 H 0.04 2.02 8.01 -2.39 -0.02 2.00 15 11 O -0.58 -29.50 11.87 -148.98 -1.77 -31.27 15 12 C 0.08 3.67 6.10 40.86 0.25 3.92 15 13 C -0.23 -9.76 10.37 23.51 0.24 -9.51 15 14 C -0.13 -4.90 6.37 -20.20 -0.13 -5.02 15 15 C -0.09 -2.64 10.05 22.22 0.22 -2.42 15 16 C -0.15 -3.48 9.97 22.04 0.22 -3.26 15 17 C -0.10 -2.33 10.01 22.30 0.22 -2.11 15 18 C -0.14 -3.85 10.08 22.37 0.23 -3.62 15 19 C 0.07 2.49 7.28 39.03 0.28 2.77 15 20 N -0.59 -22.91 6.07 -175.91 -1.07 -23.97 15 21 H 0.42 14.27 8.96 -92.71 -0.83 13.44 15 22 H 0.27 16.67 6.47 -92.71 -0.60 16.07 15 23 H 0.37 16.85 8.08 -74.06 -0.60 16.25 15 24 H 0.14 5.59 7.48 -2.91 -0.02 5.57 15 25 H 0.13 3.36 8.06 -2.91 -0.02 3.33 15 26 H 0.15 2.47 8.06 -2.91 -0.02 2.44 15 27 H 0.16 2.35 8.06 -2.91 -0.02 2.33 15 28 H 0.14 3.06 8.06 -2.91 -0.02 3.04 15 Total: -1.00 -67.01 249.00 1.75 -65.26 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.07 Total: 34.40 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 2.31 Total: -40.99 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -0.78 Total: -78.60 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -1.77 Total: -31.27 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.05 Total: 51.20 kcal Total: -67.01 1.75 -65.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751260.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.333 kcal (2) G-P(sol) polarization free energy of solvation -67.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds