Wall clock time and date at job start Mon Mar 30 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86794 * 120.00483 * 2 1 4 4 H 1.48496 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99736 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99549 * 3 2 1 7 7 C 1.40037 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41399 * 119.99933 * 0.27891 * 7 2 1 10 10 C 1.40585 * 119.81138 * 179.44532 * 9 7 2 11 11 C 1.38353 * 118.99060 * 179.76969 * 10 9 7 12 12 Cl 1.73602 * 120.70919 * 180.24021 * 11 10 9 13 13 C 1.39038 * 118.57606 * 0.49907 * 11 10 9 14 14 C 1.38881 * 119.53148 * 359.74512 * 13 11 10 15 15 Cl 1.73597 * 119.50023 * 179.97438 * 14 13 11 16 16 N 1.31540 * 120.99400 * 359.97438 * 14 13 11 17 17 H 0.97005 * 119.99633 * 0.02562 * 1 2 3 18 18 H 1.07998 * 120.50764 * 0.02562 * 10 9 7 19 19 H 1.07998 * 120.22825 * 179.72072 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 -0.0006 5 1 1.8829 2.3963 -1.2126 6 1 1.8828 2.3965 1.2124 7 6 2.0075 -1.2128 0.0005 8 1 3.0876 -1.2128 0.0001 9 6 1.3005 -2.4373 -0.0049 10 6 2.0073 -3.6525 -0.0161 11 6 1.2984 -4.8406 -0.0164 12 17 2.1259 -6.3667 -0.0238 13 6 -0.0909 -4.7861 -0.0162 14 6 -0.7276 -3.5518 -0.0103 15 17 -2.4622 -3.4847 -0.0106 16 7 -0.0359 -2.4329 -0.0044 17 1 -0.4850 0.8401 -0.0004 18 1 3.0873 -3.6585 -0.0202 19 1 -0.6708 -5.6971 -0.0209 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259804444.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:40 Heat of formation + Delta-G solvation = 6.762469 kcal Electronic energy + Delta-G solvation = -10121.174999 eV Core-core repulsion = 7883.066554 eV Total energy + Delta-G solvation = -2238.108445 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 216.976 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.46675 -35.90100 -35.53461 -33.74970 -30.55625 -30.12729 -26.02693 -22.03627 -21.66605 -17.88938 -16.16896 -15.05502 -14.79981 -14.43357 -13.22270 -13.09347 -12.96539 -11.63746 -11.46733 -11.41534 -11.31860 -10.93654 -10.56593 -10.54558 -10.17903 -10.04482 -9.44157 -8.25600 -8.02956 -7.86210 -6.68534 -4.84364 2.35037 2.48452 2.66912 2.98487 2.99815 3.03082 3.20823 3.78019 4.43400 5.48403 6.06927 6.26798 6.36418 6.53024 6.89790 7.01725 7.18422 7.39054 7.90085 8.27694 8.53737 9.60664 10.03287 Molecular weight = 216.98amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.011422 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.578374 B = 2450.875563 C = 3430.607103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.062 3.938 3 Si 0.915 3.085 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.410 4.410 8 H 0.094 0.906 9 C 0.271 3.729 10 C -0.264 4.264 11 C 0.051 3.949 12 Cl -0.103 7.103 13 C -0.305 4.305 14 C 0.232 3.768 15 Cl -0.080 7.080 16 N -0.479 5.479 17 H 0.279 0.721 18 H 0.117 0.883 19 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.980 -2.554 -0.021 2.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.165 4.165 3 Si 0.738 3.262 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.440 4.440 8 H 0.112 0.888 9 C 0.148 3.852 10 C -0.288 4.288 11 C 0.019 3.981 12 Cl -0.074 7.074 13 C -0.330 4.330 14 C 0.057 3.943 15 Cl -0.052 7.052 16 N -0.194 5.194 17 H 0.090 0.910 18 H 0.135 0.865 19 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.322 -1.703 -0.017 1.733 hybrid contribution 0.599 -0.270 -0.008 0.657 sum 0.920 -1.974 -0.025 2.178 Atomic orbital electron populations 1.70123 1.07313 1.28608 1.25811 1.26177 0.95068 1.01584 0.93692 0.86136 0.80770 0.80422 0.78848 1.18124 1.19552 1.19542 1.19781 0.94724 0.88878 1.40610 0.88791 1.18290 0.86209 0.91689 0.89053 1.21746 0.99750 0.91235 1.16070 1.20627 0.91699 0.84950 1.00812 1.98284 1.79237 1.32793 1.97111 1.20686 0.92204 0.96869 1.23246 1.21346 0.85486 0.90178 0.97249 1.98297 1.11277 1.98805 1.96832 1.67930 1.07540 1.25439 1.18458 0.90957 0.86459 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.73 11.46 55.55 0.64 -17.09 13 2 C 0.06 1.49 5.50 -17.34 -0.10 1.40 13 3 Si 0.91 17.40 29.56 -169.99 -5.02 12.38 13 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 13 5 H -0.27 -5.10 7.11 56.52 0.40 -4.69 13 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 13 7 C -0.41 -10.23 9.14 -37.71 -0.34 -10.57 13 8 H 0.09 2.15 7.85 -52.49 -0.41 1.74 13 9 C 0.27 7.04 6.55 -84.99 -0.56 6.49 13 10 C -0.26 -6.19 9.65 -38.65 -0.37 -6.56 13 11 C 0.05 1.13 6.36 -39.24 -0.25 0.88 13 12 Cl -0.10 -1.89 29.01 -51.86 -1.50 -3.39 13 13 C -0.30 -6.83 9.71 -39.05 -0.38 -7.21 13 14 C 0.23 5.61 7.27 -17.44 -0.13 5.48 13 15 Cl -0.08 -1.68 29.10 -51.86 -1.51 -3.19 13 16 N -0.48 -12.78 7.84 -8.26 -0.06 -12.85 13 17 H 0.28 6.38 8.29 -40.82 -0.34 6.04 13 18 H 0.12 2.52 8.06 -52.49 -0.42 2.10 13 19 H 0.12 2.35 8.06 -52.49 -0.42 1.92 13 LS Contribution 214.74 15.07 3.24 3.24 Total: -1.00 -26.22 214.74 -6.75 -32.96 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -0.39 Total: -1.96 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -2.13 Total: -10.09 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.57 Total: -29.94 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.02 Total: 12.38 kcal Atomic # 17 Polarization: -3.57 SS G_CDS: -3.01 Total: -6.58 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -26.22 -6.75 -32.96 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804444.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.725 kcal (2) G-P(sol) polarization free energy of solvation -26.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds