Wall clock time and date at job start Mon Mar 30 2020 02:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 F 1.39897 * 109.47241 * 2 1 4 4 F 1.39904 * 109.46647 * 239.99770 * 2 1 3 5 5 C 1.50703 * 109.46881 * 120.00010 * 2 1 3 6 6 N 1.30253 * 125.62191 * 299.97625 * 5 2 1 7 7 C 1.34477 * 108.70258 * 179.77857 * 6 5 2 8 8 C 1.34326 * 107.66595 * 0.38789 * 7 6 5 9 9 C 1.50700 * 126.44321 * 179.87461 * 8 7 6 10 10 C 1.50702 * 109.46869 * 89.71455 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 O 1.33968 * 125.61821 * 119.99502 * 5 2 1 19 19 H 1.09004 * 109.46734 * 300.00318 * 1 2 3 20 20 H 1.09003 * 109.46573 * 59.99860 * 1 2 3 21 21 H 1.08994 * 109.47290 * 179.97438 * 1 2 3 22 22 H 1.07995 * 126.16844 * 180.26835 * 7 6 5 23 23 H 1.09004 * 109.47210 * 329.71748 * 9 8 7 24 24 H 1.08994 * 109.47551 * 209.71400 * 9 8 7 25 25 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0324 -0.7104 1.2305 6 7 1.7864 -0.3619 2.4612 7 6 2.3956 -1.2323 3.2858 8 6 3.0387 -2.1331 2.5246 9 6 3.8609 -3.2964 3.0163 10 6 2.9746 -4.5042 3.1803 11 1 1.9214 -4.4363 2.9510 12 6 3.5096 -5.6976 3.6171 13 7 4.7921 -5.7803 3.8960 14 14 2.4124 -7.1966 3.8131 15 1 1.7997 -7.5362 2.5037 16 1 3.2235 -8.3443 4.2930 17 1 1.3418 -6.9012 4.7989 18 8 2.8057 -1.8043 1.2388 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 2.3735 -1.2098 4.3652 23 1 4.3113 -3.0432 3.9761 24 1 4.6463 -3.5175 2.2936 25 1 5.1684 -6.6198 4.2036 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259938108.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:20 Heat of formation + Delta-G solvation = -88.144157 kcal Electronic energy + Delta-G solvation = -14296.726880 eV Core-core repulsion = 11333.663319 eV Total energy + Delta-G solvation = -2963.063561 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.065 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.09049 -47.11370 -42.81268 -34.38266 -33.79918 -32.37636 -30.55753 -27.20412 -24.44834 -23.09479 -21.44357 -20.54169 -18.01286 -17.51610 -16.85433 -16.43308 -15.58467 -15.36349 -14.67050 -14.00851 -13.51595 -13.42955 -13.16080 -12.74256 -12.64742 -12.45770 -12.35296 -11.69493 -11.50762 -11.04730 -10.90764 -10.86133 -10.39493 -9.94984 -9.78141 -8.63629 -8.16523 -6.26295 -4.33132 1.85794 2.67524 3.08726 3.22404 3.26813 3.30471 3.63168 3.87539 4.28304 4.52008 4.60716 5.09676 5.25846 5.46062 5.57190 5.71410 5.76348 6.05703 6.46699 6.72680 7.12647 7.23792 7.66842 7.94314 8.07495 8.68618 9.32279 10.83373 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.049503 B = 0.007045 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.483167 B = 3973.561683 C = 4106.320968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.414 3.586 3 F -0.180 7.180 4 F -0.183 7.183 5 C 0.061 3.939 6 N -0.436 5.436 7 C -0.083 4.083 8 C 0.053 3.947 9 C 0.087 3.913 10 C -0.527 4.527 11 H 0.060 0.940 12 C 0.064 3.936 13 N -0.889 5.889 14 Si 0.905 3.095 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 O -0.183 6.183 19 H 0.101 0.899 20 H 0.092 0.908 21 H 0.094 0.906 22 H 0.187 0.813 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 8.702 -5.404 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.376 3.624 3 F -0.161 7.161 4 F -0.164 7.164 5 C -0.145 4.145 6 N -0.167 5.167 7 C -0.222 4.222 8 C -0.001 4.001 9 C 0.050 3.950 10 C -0.565 4.565 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.732 3.268 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.199 1.199 18 O -0.068 6.068 19 H 0.119 0.881 20 H 0.111 0.889 21 H 0.113 0.887 22 H 0.204 0.796 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.742 9.095 -5.282 12.493 hybrid contribution 0.091 -1.371 -0.033 1.375 sum -6.651 7.724 -5.315 11.495 Atomic orbital electron populations 1.22735 0.88689 1.06351 1.06112 1.18213 0.93451 0.73916 0.76796 1.93082 1.90761 1.35960 1.96329 1.93080 1.90697 1.80918 1.51656 1.25751 1.01844 0.91232 0.95631 1.70091 1.20686 1.26715 0.99188 1.22993 1.03326 0.94953 1.00970 1.25210 0.98056 0.98214 0.78614 1.18183 0.93529 0.86104 0.97134 1.20884 0.95016 0.93843 1.46786 0.92128 1.24977 0.95268 0.98956 0.94671 1.69923 1.11514 1.27094 1.44139 0.86437 0.80222 0.81368 0.78794 1.19960 1.20941 1.19887 1.84464 1.53183 1.37841 1.31293 0.88067 0.88904 0.88730 0.79599 0.91926 0.93756 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.37 37.16 0.35 -1.69 15 2 C 0.41 6.40 2.53 -27.88 -0.07 6.33 15 3 F -0.18 -2.81 17.05 2.25 0.04 -2.77 15 4 F -0.18 -2.94 16.93 2.25 0.04 -2.90 15 5 C 0.06 1.19 7.12 -12.95 -0.09 1.10 15 6 N -0.44 -8.59 11.29 -11.10 -0.13 -8.72 15 7 C -0.08 -1.68 11.80 -17.77 -0.21 -1.89 15 8 C 0.05 1.20 6.57 -35.69 -0.23 0.96 15 9 C 0.09 2.17 5.53 -29.03 -0.16 2.01 15 10 C -0.53 -14.23 9.09 -34.44 -0.31 -14.54 15 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 13 N -0.89 -24.98 13.29 55.43 0.74 -24.24 15 14 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 15 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 18 O -0.18 -4.05 10.62 5.37 0.06 -3.99 15 19 H 0.10 1.10 8.14 -51.93 -0.42 0.68 15 20 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.09 1.03 8.14 -51.93 -0.42 0.60 15 22 H 0.19 3.29 8.06 -52.49 -0.42 2.87 15 23 H 0.06 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.04 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 LS Contribution 242.33 15.07 3.65 3.65 Total: -1.00 -29.06 242.33 -3.53 -32.59 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -2.08 Total: -3.23 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.83 Total: -6.07 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.61 Total: -32.96 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: 0.06 Total: -3.99 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.08 Total: -5.67 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.06 -3.53 -32.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938108.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.551 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds