Wall clock time and date at job start Mon Mar 30 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30605 * 1 3 3 Si 1.86801 * 119.99801 * 2 1 4 4 H 1.48499 * 109.47049 * 239.99723 * 3 2 1 5 5 H 1.48501 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46770 * 119.99929 * 3 2 1 7 7 C 1.40216 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.41260 * 119.99782 * 0.02562 * 7 2 1 10 10 N 1.30636 * 123.22578 * 0.02562 * 9 7 2 11 11 C 1.47583 * 108.33737 * 179.35044 * 10 9 7 12 12 C 1.54787 * 102.10872 * 345.01480 * 11 10 9 13 13 H 1.09000 * 111.01635 * 265.57078 * 12 11 10 14 14 C 1.50700 * 111.01565 * 141.72431 * 12 11 10 15 15 C 1.38234 * 119.99958 * 279.72296 * 14 12 11 16 16 C 1.38235 * 120.00357 * 179.79301 * 15 14 12 17 17 C 1.38239 * 119.99772 * 0.43762 * 16 15 14 18 18 C 1.38245 * 119.99790 * 359.81910 * 17 16 15 19 19 C 1.38230 * 120.00083 * 100.00287 * 14 12 11 20 20 O 1.35193 * 123.22443 * 179.97438 * 9 7 2 21 21 H 0.97003 * 119.99912 * 0.02562 * 1 2 3 22 22 H 1.09001 * 110.90644 * 226.80779 * 11 10 9 23 23 H 1.09004 * 110.90260 * 103.22092 * 11 10 9 24 24 H 1.08003 * 119.99945 * 0.02562 * 15 14 12 25 25 H 1.07999 * 120.00186 * 180.27739 * 16 15 14 26 26 H 1.07996 * 120.00487 * 179.83261 * 17 16 15 27 27 H 1.07998 * 119.99797 * 179.97438 * 18 17 16 28 28 H 1.08003 * 120.00323 * 359.97021 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 3.0938 1.6964 -1.2125 5 1 1.2750 2.7465 0.0006 6 1 3.0937 1.6964 1.2126 7 6 2.0072 -1.2143 0.0005 8 1 3.0871 -1.2143 0.0001 9 6 1.3009 -2.4376 0.0005 10 7 -0.0034 -2.5111 -0.0004 11 6 -0.3882 -3.9358 -0.0160 12 6 0.9386 -4.6261 -0.4147 13 1 0.9852 -4.7915 -1.4910 14 6 1.1218 -5.9198 0.3364 15 6 1.5899 -5.9036 1.6369 16 6 1.7539 -7.0899 2.3274 17 6 1.4582 -8.2930 1.7142 18 6 0.9950 -8.3095 0.4118 19 6 0.8271 -7.1229 -0.2771 20 8 1.9099 -3.6446 0.0005 21 1 -0.4850 0.8401 -0.0004 22 1 -1.1623 -4.1216 -0.7605 23 1 -0.7145 -4.2613 0.9718 24 1 1.8241 -4.9638 2.1149 25 1 2.1154 -7.0769 3.3450 26 1 1.5888 -9.2200 2.2526 27 1 0.7645 -9.2495 -0.0674 28 1 0.4651 -7.1358 -1.2946 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259939692.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:30 Heat of formation + Delta-G solvation = 9.651335 kcal Electronic energy + Delta-G solvation = -13794.273234 eV Core-core repulsion = 11389.679933 eV Total energy + Delta-G solvation = -2404.593301 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.78388 -38.26791 -33.61708 -31.94305 -31.16599 -30.62645 -28.22920 -25.46593 -22.55138 -22.28160 -20.64848 -19.85412 -16.84224 -16.64117 -15.58733 -15.26203 -15.01207 -14.07469 -13.94173 -13.40873 -13.11060 -12.61609 -12.26180 -11.96815 -11.73619 -11.33984 -11.20846 -10.81992 -10.68621 -10.57508 -10.37620 -10.06361 -9.15691 -8.68089 -8.59575 -7.73251 -7.39679 -6.42340 -4.65356 1.58031 1.65432 3.10113 3.15684 3.18124 3.94675 4.04351 4.15354 4.72992 5.11245 5.17455 5.24951 5.36411 5.50481 5.68338 5.80990 5.88673 5.97430 6.19860 6.33658 6.56822 6.65100 6.73907 6.77959 6.90832 6.99961 7.24054 7.34212 7.74325 8.20483 8.77209 8.96385 10.08593 10.48445 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.066433 B = 0.006759 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.378269 B = 4141.709739 C = 4316.626363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.077 3.923 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.374 3.626 10 N -0.597 5.597 11 C 0.016 3.984 12 C 0.083 3.917 13 H 0.076 0.924 14 C -0.064 4.064 15 C -0.095 4.095 16 C -0.123 4.123 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.116 4.116 20 O -0.364 6.364 21 H 0.273 0.727 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.127 0.873 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -9.882 1.214 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.174 3.826 10 N -0.343 5.343 11 C -0.115 4.115 12 C 0.024 3.976 13 H 0.094 0.906 14 C -0.065 4.065 15 C -0.113 4.113 16 C -0.141 4.141 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.134 4.134 20 O -0.272 6.272 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.145 0.855 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.153 -9.409 1.277 9.565 hybrid contribution 0.719 -0.046 -0.064 0.724 sum 1.872 -9.455 1.213 9.715 Atomic orbital electron populations 1.70011 1.06997 1.27857 1.30937 1.25749 0.94855 1.00426 0.93676 0.86227 0.79714 0.80067 0.79742 1.19053 1.20352 1.19047 1.18516 0.93976 0.86489 1.49922 0.89862 1.22030 0.88089 0.83688 0.88790 1.76232 1.09027 1.07403 1.41675 1.23848 0.94829 0.93864 0.98936 1.22595 0.91600 0.86766 0.96643 0.90639 1.19850 0.98037 0.93907 0.94689 1.21099 0.97543 0.98567 0.94110 1.21141 1.00637 0.92509 0.99796 1.21073 1.00748 0.97697 0.95379 1.21011 1.00648 0.97575 0.94982 1.20905 1.00903 0.91713 0.99927 1.86959 1.39262 1.17123 1.83892 0.91578 0.92290 0.93562 0.85515 0.86261 0.86504 0.86312 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.55 11.74 55.56 0.65 -19.90 15 2 C 0.08 2.05 5.50 -17.33 -0.10 1.95 15 3 Si 0.92 19.33 29.56 -169.99 -5.02 14.31 15 4 H -0.27 -5.48 7.11 56.52 0.40 -5.07 15 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 15 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 7 C -0.45 -12.68 9.50 -37.69 -0.36 -13.04 15 8 H 0.08 2.20 7.85 -52.49 -0.41 1.79 15 9 C 0.37 10.72 7.43 -16.91 -0.13 10.60 15 10 N -0.60 -17.29 9.69 -59.53 -0.58 -17.86 15 11 C 0.02 0.39 7.66 -2.51 -0.02 0.37 15 12 C 0.08 1.83 3.94 -26.94 -0.11 1.73 15 13 H 0.08 1.58 8.09 -51.93 -0.42 1.16 15 14 C -0.06 -1.21 5.02 -104.63 -0.52 -1.74 15 15 C -0.10 -1.74 9.39 -39.58 -0.37 -2.11 15 16 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 15 17 C -0.13 -1.74 10.05 -39.58 -0.40 -2.13 15 18 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 15 19 C -0.12 -1.82 9.70 -39.58 -0.38 -2.20 15 20 O -0.36 -9.47 10.05 -17.27 -0.17 -9.64 15 21 H 0.27 6.95 8.29 -40.82 -0.34 6.61 15 22 H 0.06 1.32 8.14 -51.93 -0.42 0.90 15 23 H 0.05 1.10 7.91 -51.93 -0.41 0.69 15 24 H 0.13 2.52 7.60 -52.48 -0.40 2.12 15 25 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 26 H 0.12 1.20 8.06 -52.49 -0.42 0.78 15 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.12 1.64 8.06 -52.48 -0.42 1.22 15 LS Contribution 250.77 15.07 3.78 3.78 Total: -1.00 -31.08 250.77 -7.41 -38.49 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -2.89 Total: 1.70 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.18 Total: -10.87 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.08 Total: -37.76 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.17 Total: -9.64 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.08 -7.41 -38.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939692.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.140 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds