Wall clock time and date at job start Mon Mar 30 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30605 * 1 3 3 Si 1.86801 * 119.99801 * 2 1 4 4 H 1.48499 * 109.47049 * 239.99723 * 3 2 1 5 5 H 1.48501 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46770 * 119.99929 * 3 2 1 7 7 C 1.40216 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.41260 * 119.99782 * 0.02562 * 7 2 1 10 10 N 1.30636 * 123.22578 * 0.02562 * 9 7 2 11 11 C 1.47583 * 108.33737 * 179.35044 * 10 9 7 12 12 C 1.54787 * 102.10872 * 345.01480 * 11 10 9 13 13 H 1.09000 * 111.01635 * 265.57078 * 12 11 10 14 14 C 1.50700 * 111.01565 * 141.72431 * 12 11 10 15 15 C 1.38234 * 119.99958 * 279.72296 * 14 12 11 16 16 C 1.38235 * 120.00357 * 179.79301 * 15 14 12 17 17 C 1.38239 * 119.99772 * 0.43762 * 16 15 14 18 18 C 1.38245 * 119.99790 * 359.81910 * 17 16 15 19 19 C 1.38230 * 120.00083 * 100.00287 * 14 12 11 20 20 O 1.35193 * 123.22443 * 179.97438 * 9 7 2 21 21 H 0.97003 * 119.99912 * 0.02562 * 1 2 3 22 22 H 1.09001 * 110.90644 * 226.80779 * 11 10 9 23 23 H 1.09004 * 110.90260 * 103.22092 * 11 10 9 24 24 H 1.08003 * 119.99945 * 0.02562 * 15 14 12 25 25 H 1.07999 * 120.00186 * 180.27739 * 16 15 14 26 26 H 1.07996 * 120.00487 * 179.83261 * 17 16 15 27 27 H 1.07998 * 119.99797 * 179.97438 * 18 17 16 28 28 H 1.08003 * 120.00323 * 359.97021 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 3.0938 1.6964 -1.2125 5 1 1.2750 2.7465 0.0006 6 1 3.0937 1.6964 1.2126 7 6 2.0072 -1.2143 0.0005 8 1 3.0871 -1.2143 0.0001 9 6 1.3009 -2.4376 0.0005 10 7 -0.0034 -2.5111 -0.0004 11 6 -0.3882 -3.9358 -0.0160 12 6 0.9386 -4.6261 -0.4147 13 1 0.9852 -4.7915 -1.4910 14 6 1.1218 -5.9198 0.3364 15 6 1.5899 -5.9036 1.6369 16 6 1.7539 -7.0899 2.3274 17 6 1.4582 -8.2930 1.7142 18 6 0.9950 -8.3095 0.4118 19 6 0.8271 -7.1229 -0.2771 20 8 1.9099 -3.6446 0.0005 21 1 -0.4850 0.8401 -0.0004 22 1 -1.1623 -4.1216 -0.7605 23 1 -0.7145 -4.2613 0.9718 24 1 1.8241 -4.9638 2.1149 25 1 2.1154 -7.0769 3.3450 26 1 1.5888 -9.2200 2.2526 27 1 0.7645 -9.2495 -0.0674 28 1 0.4651 -7.1358 -1.2946 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259939692.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:30 Heat of formation + Delta-G solvation = -12.484986 kcal Electronic energy + Delta-G solvation = -13795.233137 eV Core-core repulsion = 11389.679933 eV Total energy + Delta-G solvation = -2405.553204 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.57072 -39.67494 -35.63557 -33.62393 -33.02704 -31.82034 -30.05435 -27.33380 -24.21539 -23.52397 -22.42329 -21.61130 -18.82899 -18.05243 -17.33148 -17.17484 -16.36334 -15.65377 -15.46968 -14.95164 -14.32946 -14.27519 -13.91621 -13.79921 -13.33487 -13.19991 -12.85012 -12.48319 -12.37465 -12.03118 -11.91810 -11.88155 -11.08508 -10.20287 -9.86789 -9.55259 -9.43579 -8.43414 -6.82230 0.34807 0.45752 1.41671 1.43091 1.57971 2.09165 2.24106 2.73632 3.06923 3.27641 3.78141 3.91519 3.94020 4.15939 4.21424 4.27226 4.59850 4.62190 4.67398 4.85626 4.91044 5.02240 5.12673 5.29982 5.51393 5.56341 5.58858 5.83090 6.07518 6.09443 6.67927 6.84470 7.99595 8.49671 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.066433 B = 0.006759 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.378269 B = 4141.709739 C = 4316.626363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.030 3.970 3 Si 1.005 2.995 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.486 4.486 8 H 0.089 0.911 9 C 0.354 3.646 10 N -0.639 5.639 11 C 0.016 3.984 12 C 0.087 3.913 13 H 0.083 0.917 14 C -0.094 4.094 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.119 4.119 20 O -0.379 6.379 21 H 0.282 0.718 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.142 0.858 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 -11.401 1.283 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.190 4.190 3 Si 0.824 3.176 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.524 4.524 8 H 0.107 0.893 9 C 0.154 3.846 10 N -0.386 5.386 11 C -0.115 4.115 12 C 0.028 3.972 13 H 0.100 0.900 14 C -0.094 4.094 15 C -0.142 4.142 16 C -0.141 4.141 17 C -0.136 4.136 18 C -0.132 4.132 19 C -0.137 4.137 20 O -0.287 6.287 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.160 0.840 26 H 0.177 0.823 27 H 0.178 0.822 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.799 -10.963 1.344 11.190 hybrid contribution 0.476 0.258 -0.065 0.545 sum 2.275 -10.705 1.279 11.018 Atomic orbital electron populations 1.70125 1.09048 1.29592 1.31116 1.26902 0.95783 1.04230 0.92128 0.84939 0.78242 0.74201 0.80241 1.17958 1.19006 1.18125 1.19046 0.94646 0.87531 1.51148 0.89278 1.22381 0.88549 0.84725 0.88914 1.76132 1.09567 1.10563 1.42366 1.23796 0.96278 0.92353 0.99064 1.22696 0.89383 0.87489 0.97597 0.89970 1.19713 1.01255 0.93367 0.95082 1.21001 0.99799 0.98801 0.94582 1.21408 1.00091 0.91912 1.00737 1.21581 0.98230 0.98373 0.95395 1.21499 0.98632 0.98135 0.94947 1.21158 1.00413 0.91234 1.00900 1.86918 1.40505 1.17261 1.84050 0.90771 0.91137 0.94042 0.88904 0.84017 0.82349 0.82234 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -44.46 11.74 21.87 0.26 -44.21 15 2 C 0.03 1.62 5.50 85.36 0.47 2.09 15 3 Si 1.01 39.69 29.56 68.60 2.03 41.71 15 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 5 H -0.27 -9.85 7.11 99.48 0.71 -9.15 15 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 7 C -0.49 -28.31 9.50 23.49 0.22 -28.09 15 8 H 0.09 4.87 7.85 -2.91 -0.02 4.85 15 9 C 0.35 21.30 7.43 85.61 0.64 21.94 15 10 N -0.64 -38.73 9.69 -456.21 -4.42 -43.15 15 11 C 0.02 0.79 7.66 86.78 0.67 1.46 15 12 C 0.09 3.97 3.94 30.46 0.12 4.09 15 13 H 0.08 3.54 8.09 -2.39 -0.02 3.52 15 14 C -0.09 -3.56 5.02 -19.87 -0.10 -3.66 15 15 C -0.12 -4.62 9.39 22.27 0.21 -4.41 15 16 C -0.12 -3.46 10.05 22.27 0.22 -3.24 15 17 C -0.12 -2.63 10.05 22.27 0.22 -2.41 15 18 C -0.11 -2.59 10.05 22.27 0.22 -2.37 15 19 C -0.12 -3.48 9.70 22.27 0.22 -3.26 15 20 O -0.38 -20.76 10.05 -84.73 -0.85 -21.61 15 21 H 0.28 14.56 8.29 -92.71 -0.77 13.79 15 22 H 0.07 3.27 8.14 -2.39 -0.02 3.25 15 23 H 0.04 2.07 7.91 -2.38 -0.02 2.05 15 24 H 0.09 3.99 7.60 -2.91 -0.02 3.97 15 25 H 0.14 3.21 8.06 -2.91 -0.02 3.19 15 26 H 0.16 2.28 8.06 -2.91 -0.02 2.25 15 27 H 0.16 2.37 8.06 -2.91 -0.02 2.34 15 28 H 0.14 3.44 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -70.82 250.77 1.28 -69.54 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 1.16 Total: 15.56 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 3.11 Total: -17.85 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -4.16 Total: -87.35 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.85 Total: -21.61 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.71 kcal Total: -70.82 1.28 -69.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939692.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.056 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds