Wall clock time and date at job start Mon Mar 30 2020 02:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39896 * 109.46978 * 2 1 4 4 F 1.39901 * 109.46787 * 239.99963 * 2 1 3 5 5 C 1.50699 * 109.47048 * 120.00013 * 2 1 3 6 6 N 1.30254 * 125.61568 * 245.00023 * 5 2 1 7 7 C 1.34483 * 108.70003 * 180.02562 * 6 5 2 8 8 C 1.50706 * 126.16500 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46931 * 305.02172 * 8 7 6 10 10 H 1.08001 * 120.00245 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99909 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99974 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00062 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47240 * 89.99272 * 13 11 9 15 15 H 1.48500 * 109.47334 * 209.99730 * 13 11 9 16 16 H 1.48502 * 109.46961 * 329.99389 * 13 11 9 17 17 C 1.34322 * 107.66912 * 359.97438 * 7 6 5 18 18 O 1.33960 * 125.62305 * 65.02512 * 5 2 1 19 19 H 1.08999 * 109.47083 * 299.99745 * 1 2 3 20 20 H 1.08997 * 109.47385 * 60.00172 * 1 2 3 21 21 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47190 * 65.02440 * 8 7 6 23 23 H 1.08997 * 109.46589 * 185.02656 * 8 7 6 24 24 H 0.97004 * 119.99655 * 179.97438 * 12 11 9 25 25 H 1.08003 * 126.44526 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2305 6 7 2.7071 -0.1623 2.2005 7 6 2.9806 -1.1036 3.1211 8 6 3.7435 -0.8975 4.4044 9 6 5.0882 -0.2903 4.0972 10 1 5.3627 -0.0748 3.0752 11 6 5.9675 -0.0089 5.1212 12 7 7.1412 0.5206 4.8531 13 14 5.4925 -0.3809 6.8890 14 1 5.9179 -1.7607 7.2360 15 1 6.1620 0.5862 7.7955 16 1 4.0199 -0.2640 7.0410 17 6 2.4511 -2.2607 2.6909 18 8 1.8590 -2.0097 1.5067 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.1830 -0.2280 5.0568 23 1 3.8833 -1.8571 4.9020 24 1 7.7597 0.7189 5.5736 25 1 2.4930 -3.2133 3.1981 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259971624.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:21 Heat of formation + Delta-G solvation = -103.377142 kcal Electronic energy + Delta-G solvation = -14341.358912 eV Core-core repulsion = 11377.634799 eV Total energy + Delta-G solvation = -2963.724113 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.31656 -48.35444 -44.42431 -36.59233 -34.97763 -33.86412 -32.01480 -29.52231 -25.76833 -25.00985 -22.61113 -21.96986 -19.19018 -18.98040 -18.66139 -17.97001 -17.39389 -17.15197 -16.38920 -15.41608 -15.11652 -14.87320 -14.66701 -14.43753 -14.05880 -13.95106 -13.52714 -13.35166 -12.84775 -12.78670 -12.39279 -12.21482 -11.79168 -11.67257 -11.52122 -10.79488 -9.87819 -8.29700 -6.36625 0.22858 1.19110 1.37823 1.42417 1.53281 1.56617 2.36455 2.37541 2.67861 3.04634 3.34140 3.40738 3.88893 4.03637 4.41206 4.54134 4.56218 4.75830 4.92353 4.92622 5.16507 5.18602 5.53986 6.23675 6.60913 6.70696 7.25595 8.88239 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.049200 B = 0.007565 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.970363 B = 3700.532955 C = 3951.843585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.404 3.596 3 F -0.181 7.181 4 F -0.187 7.187 5 C 0.089 3.911 6 N -0.469 5.469 7 C -0.012 4.012 8 C 0.061 3.939 9 C -0.525 4.525 10 H 0.015 0.985 11 C 0.002 3.998 12 N -0.954 5.954 13 Si 0.962 3.038 14 H -0.255 1.255 15 H -0.286 1.286 16 H -0.240 1.240 17 C -0.046 4.046 18 O -0.184 6.184 19 H 0.101 0.899 20 H 0.124 0.876 21 H 0.114 0.886 22 H 0.038 0.962 23 H 0.065 0.935 24 H 0.268 0.732 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.755 -6.170 -5.713 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.367 3.633 3 F -0.162 7.162 4 F -0.168 7.168 5 C -0.119 4.119 6 N -0.200 5.200 7 C -0.132 4.132 8 C 0.024 3.976 9 C -0.564 4.564 10 H 0.033 0.967 11 C -0.194 4.194 12 N -0.594 5.594 13 Si 0.784 3.216 14 H -0.179 1.179 15 H -0.212 1.212 16 H -0.163 1.163 17 C -0.115 4.115 18 O -0.069 6.069 19 H 0.120 0.880 20 H 0.142 0.858 21 H 0.133 0.867 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -16.442 -5.491 -5.712 18.251 hybrid contribution 0.835 -0.289 0.456 0.995 sum -15.606 -5.780 -5.256 17.452 Atomic orbital electron populations 1.22866 0.84379 1.08056 1.07921 1.18821 0.95939 0.73316 0.75250 1.93089 1.91231 1.35737 1.96147 1.93080 1.91134 1.81065 1.51501 1.26820 1.03302 0.81404 1.00399 1.70275 1.11595 1.35694 1.02431 1.22328 1.01943 0.89771 0.99204 1.18076 0.92289 0.98597 0.88668 1.21105 0.99973 1.41734 0.93540 0.96700 1.26128 0.94270 0.94025 1.05024 1.70095 1.09494 1.45115 1.34746 0.85495 0.80168 0.78973 0.76981 1.17901 1.21226 1.16348 1.25769 0.98654 1.02255 0.84847 1.84346 1.60645 1.26858 1.35060 0.87979 0.85789 0.86726 0.94362 0.91671 0.92309 0.71360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.37 71.98 0.67 -2.26 15 2 C 0.40 11.77 2.53 29.85 0.08 11.84 15 3 F -0.18 -6.21 16.87 44.97 0.76 -5.46 15 4 F -0.19 -5.49 17.05 44.97 0.77 -4.73 15 5 C 0.09 3.25 7.18 88.34 0.63 3.89 15 6 N -0.47 -21.57 11.03 -291.99 -3.22 -24.79 15 7 C -0.01 -0.54 6.31 41.26 0.26 -0.28 15 8 C 0.06 2.89 4.61 29.10 0.13 3.03 15 9 C -0.53 -31.73 9.63 25.60 0.25 -31.48 15 10 H 0.01 1.03 7.98 -2.91 -0.02 1.01 15 11 C 0.00 0.11 5.47 84.65 0.46 0.57 15 12 N -0.95 -61.63 13.96 21.45 0.30 -61.33 15 13 Si 0.96 43.18 27.47 68.60 1.88 45.06 15 14 H -0.25 -10.54 7.11 99.48 0.71 -9.84 15 15 H -0.29 -12.82 7.11 99.48 0.71 -12.11 15 16 H -0.24 -9.76 6.54 99.48 0.65 -9.11 15 17 C -0.05 -1.46 12.06 66.92 0.81 -0.66 15 18 O -0.18 -5.92 10.77 -3.70 -0.04 -5.96 15 19 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 20 H 0.12 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.11 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.04 1.79 7.20 -2.39 -0.02 1.78 15 23 H 0.07 2.64 7.54 -2.39 -0.02 2.62 15 24 H 0.27 15.97 8.31 -92.71 -0.77 15.20 15 25 H 0.27 5.43 8.06 -2.91 -0.02 5.41 15 Total: -1.00 -77.99 238.58 4.90 -73.09 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: 1.15 Total: -0.55 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 3.30 Total: -15.35 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.92 Total: -86.12 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.04 Total: -5.96 kcal Atomic # 9 Polarization: -11.71 SS G_CDS: 1.53 Total: -10.18 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Total: -77.99 4.90 -73.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971624.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.287 kcal (2) G-P(sol) polarization free energy of solvation -77.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds