Wall clock time and date at job start Mon Mar 30 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47380 * 2 1 4 4 C 1.50699 * 109.47328 * 120.00365 * 2 1 3 5 5 H 1.07991 * 120.00329 * 119.99589 * 4 2 1 6 6 C 1.37882 * 119.99412 * 299.99545 * 4 2 1 7 7 N 1.31506 * 120.00399 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99761 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47241 * 59.99627 * 8 6 4 10 10 H 1.48497 * 109.47252 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47125 * 300.00409 * 8 6 4 12 12 C 1.50707 * 109.46839 * 239.99991 * 2 1 3 13 13 C 1.38148 * 119.89195 * 299.99907 * 12 2 1 14 14 C 1.38208 * 119.93271 * 179.97438 * 13 12 2 15 15 C 1.38143 * 119.93467 * 0.28625 * 14 13 12 16 16 C 1.38457 * 120.21783 * 359.41274 * 15 14 13 17 17 C 1.38258 * 119.84708 * 0.58664 * 16 15 14 18 18 C 1.51362 * 109.75589 * 179.71892 * 17 16 15 19 19 C 1.54348 * 105.17173 * 17.19083 * 18 17 16 20 20 C 1.51371 * 130.40034 * 180.23799 * 16 15 14 21 21 H 1.08994 * 109.47429 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46896 * 300.00248 * 1 2 3 23 23 H 1.09001 * 109.47120 * 59.99358 * 1 2 3 24 24 H 0.97003 * 120.00289 * 179.97438 * 7 6 4 25 25 H 1.07998 * 120.03127 * 359.97438 * 13 12 2 26 26 H 1.08002 * 120.02798 * 180.02562 * 14 13 12 27 27 H 1.08005 * 119.89035 * 179.69801 * 15 14 13 28 28 H 1.08998 * 110.30695 * 136.10925 * 18 17 16 29 29 H 1.08995 * 110.30484 * 258.16708 * 18 17 16 30 30 H 1.08994 * 110.82781 * 91.87260 * 19 18 17 31 31 H 1.09003 * 110.82314 * 215.23237 * 19 18 17 32 32 H 1.08992 * 110.29912 * 44.20262 * 20 16 15 33 33 H 1.09003 * 110.38203 * 282.09456 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8281 -0.4192 5.2204 11 1 1.8281 -2.5198 4.0081 12 6 2.0323 -0.7105 -1.2305 13 6 1.6971 -2.0331 -1.4469 14 6 2.1568 -2.6853 -2.5754 15 6 2.9554 -2.0150 -3.4817 16 6 3.2873 -0.6877 -3.2698 17 6 2.8274 -0.0352 -2.1409 18 6 3.3285 1.3931 -2.1357 19 6 3.7747 1.6699 -3.5871 20 6 4.1288 0.2578 -4.1000 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 0.7083 1.1609 3.4844 25 1 1.0765 -2.5569 -0.7350 26 1 1.8954 -3.7192 -2.7463 27 1 3.3183 -2.5268 -4.3608 28 1 2.5268 2.0742 -1.8502 29 1 4.1720 1.4955 -1.4531 30 1 2.9589 2.0998 -4.1681 31 1 4.6477 2.3224 -3.6063 32 1 3.8735 0.1637 -5.1554 33 1 5.1890 0.0552 -3.9484 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259978105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:19 Heat of formation + Delta-G solvation = -12.131367 kcal Electronic energy + Delta-G solvation = -14265.205551 eV Core-core repulsion = 12060.926687 eV Total energy + Delta-G solvation = -2204.278864 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.96429 -37.05695 -35.78613 -33.43354 -30.39827 -29.71861 -27.83221 -27.22122 -24.18470 -22.44479 -21.66230 -20.43220 -18.21500 -17.18700 -16.54809 -16.46910 -15.85800 -15.32859 -14.67034 -14.36255 -13.85752 -13.63806 -13.55887 -13.32262 -12.87693 -12.74751 -12.66808 -12.34075 -12.25881 -12.17380 -11.97097 -11.79390 -11.60695 -11.00600 -10.97737 -10.46739 -9.24197 -9.22340 -8.10665 -6.24702 0.62493 0.71276 1.39312 1.40385 1.48480 2.41192 3.02532 3.16956 3.66236 3.81102 4.21901 4.29461 4.31663 4.39930 4.57839 4.74444 4.80990 4.86965 4.88210 4.96378 5.01807 5.11193 5.16509 5.20874 5.37595 5.39402 5.50749 5.52948 5.68668 5.74429 5.83507 6.05082 6.14515 6.32248 6.41238 6.83481 7.42537 8.93530 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.034202 B = 0.008961 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.467428 B = 3123.976840 C = 3392.899542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.072 3.928 3 H 0.006 0.994 4 C -0.521 4.521 5 H 0.047 0.953 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.271 1.271 12 C -0.053 4.053 13 C -0.135 4.135 14 C -0.124 4.124 15 C -0.131 4.131 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.083 4.083 19 C -0.110 4.110 20 C -0.072 4.072 21 H 0.029 0.971 22 H 0.060 0.940 23 H 0.020 0.980 24 H 0.262 0.738 25 H 0.107 0.893 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 -2.063 -12.270 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.054 3.946 3 H 0.024 0.976 4 C -0.559 4.559 5 H 0.065 0.935 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.196 1.196 12 C -0.053 4.053 13 C -0.153 4.153 14 C -0.142 4.142 15 C -0.149 4.149 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.147 4.147 20 C -0.109 4.109 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.126 0.874 26 H 0.161 0.839 27 H 0.163 0.837 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.780 -1.938 -12.133 13.184 hybrid contribution -0.107 -0.320 1.501 1.538 sum 4.672 -2.258 -10.632 11.831 Atomic orbital electron populations 1.21618 0.97750 0.99006 0.99422 1.17701 0.92824 0.94142 0.89958 0.97601 1.21335 1.31090 1.12176 0.91293 0.93520 1.25717 0.95286 0.95732 1.01714 1.70000 1.37520 1.24025 1.24061 0.85684 0.78710 0.78876 0.78850 1.19921 1.20588 1.19601 1.20091 0.95427 0.94600 0.95222 1.20966 1.01772 0.94277 0.98249 1.21269 0.98390 1.00496 0.94004 1.20784 1.00031 0.93450 1.00640 1.20992 0.98688 0.94967 0.96242 1.20762 0.99238 0.97521 0.95774 1.21022 0.99799 0.92216 0.98991 1.22299 1.02175 0.96963 0.93252 1.21050 0.98794 0.91890 0.99131 0.95152 0.92135 0.96123 0.92877 0.87448 0.83891 0.83694 0.92648 0.91618 0.90499 0.88577 0.88802 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.18 8.78 71.98 0.63 -5.55 16 2 C 0.07 3.85 2.47 -12.29 -0.03 3.81 16 3 H 0.01 0.34 6.89 -2.38 -0.02 0.32 16 4 C -0.52 -29.80 8.24 25.60 0.21 -29.59 16 5 H 0.05 2.68 7.60 -2.92 -0.02 2.66 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -53.87 11.32 21.45 0.24 -53.62 16 8 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 C -0.05 -2.47 4.74 -19.83 -0.09 -2.56 16 13 C -0.13 -5.65 8.70 22.24 0.19 -5.45 16 14 C -0.12 -4.15 10.05 22.24 0.22 -3.93 16 15 C -0.13 -4.00 10.04 22.30 0.22 -3.78 16 16 C -0.11 -3.58 6.14 -19.59 -0.12 -3.70 16 17 C -0.13 -5.37 6.01 -19.60 -0.12 -5.48 16 18 C -0.08 -2.93 5.96 30.52 0.18 -2.75 16 19 C -0.11 -2.71 7.08 31.51 0.22 -2.49 16 20 C -0.07 -1.73 6.77 30.52 0.21 -1.52 16 21 H 0.03 1.48 7.38 -2.39 -0.02 1.46 16 22 H 0.06 3.38 6.07 -2.38 -0.01 3.36 16 23 H 0.02 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.11 4.65 7.57 -2.91 -0.02 4.63 16 26 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 27 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.05 2.09 7.76 -2.39 -0.02 2.07 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -63.85 268.99 5.53 -58.32 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.08 Total: 10.40 kcal Atomic # 6 Polarization: -63.92 SS G_CDS: 2.18 Total: -61.74 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.24 Total: -53.62 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.85 5.53 -58.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.192 kcal (2) G-P(sol) polarization free energy of solvation -63.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds