Wall clock time and date at job start Mon Mar 30 2020 02:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.12034 * 2 1 4 4 C 1.53669 * 109.13132 * 119.17172 * 2 1 3 5 5 S 1.82201 * 103.28240 * 120.47079 * 4 2 1 6 6 C 1.76756 * 95.68029 * 359.97438 * 5 4 2 7 7 S 1.76193 * 125.01868 * 179.97438 * 6 5 4 8 8 C 1.81002 * 100.00049 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47156 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47094 * 90.00289 * 13 11 9 15 15 H 1.48505 * 109.47195 * 210.00171 * 13 11 9 16 16 H 1.48493 * 109.47449 * 330.00136 * 13 11 9 17 17 N 1.28535 * 109.96010 * 0.24701 * 6 5 4 18 18 H 1.09000 * 109.47296 * 300.83262 * 1 2 3 19 19 H 1.09004 * 109.46820 * 60.82526 * 1 2 3 20 20 H 1.08994 * 109.47476 * 180.82797 * 1 2 3 21 21 H 1.09007 * 110.65590 * 2.01860 * 4 2 1 22 22 H 1.08994 * 110.79608 * 238.98664 * 4 2 1 23 23 H 1.09002 * 109.47115 * 60.00094 * 8 7 6 24 24 H 1.09001 * 109.46925 * 300.00251 * 8 7 6 25 25 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8870 1.0299 0.0000 4 6 2.0336 -0.7077 1.2677 5 16 3.0204 -2.0913 0.6107 6 6 2.7471 -1.7077 -1.0929 7 16 3.3988 -2.6202 -2.4520 8 6 2.7171 -1.6633 -3.8289 9 6 3.1554 -2.2777 -5.1333 10 1 3.7819 -3.1574 -5.1322 11 6 2.7557 -1.7174 -6.3280 12 7 1.9925 -0.6465 -6.3292 13 14 3.2985 -2.4795 -7.9448 14 1 2.3021 -3.4939 -8.3729 15 1 3.4032 -1.4206 -8.9807 16 1 4.6215 -3.1297 -7.7662 17 7 2.0073 -0.6614 -1.1939 18 1 -0.3634 0.5267 0.8824 19 1 -0.3633 0.5010 -0.8973 20 1 -0.3634 -1.0275 0.0148 21 1 1.1966 -1.0789 1.8591 22 1 2.6564 -0.0395 1.8623 23 1 3.0778 -0.6363 -3.7713 24 1 1.6286 -1.6698 -3.7721 25 1 1.7116 -0.2520 -7.1697 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259992262.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:08 Heat of formation + Delta-G solvation = -13.475952 kcal Electronic energy + Delta-G solvation = -10307.752546 eV Core-core repulsion = 8344.520099 eV Total energy + Delta-G solvation = -1963.232447 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 217.029 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.17577 -35.33056 -33.27754 -30.72427 -28.48071 -25.70816 -24.95594 -21.61072 -19.49880 -18.39323 -17.23531 -16.68551 -16.61061 -15.39276 -15.03130 -14.65888 -14.50222 -13.96703 -13.80556 -13.28780 -13.06356 -12.76087 -12.59997 -12.43806 -12.32876 -11.75334 -11.62560 -11.24751 -10.75796 -10.41001 -9.03386 -8.81050 -8.33723 -6.50536 -0.01477 0.49768 0.76175 1.01945 1.41802 1.43599 1.52329 1.61249 2.36767 3.00992 3.28823 3.70954 3.81548 4.16054 4.40994 4.46779 4.73329 4.87531 4.90354 5.00746 5.14794 5.53194 5.79963 6.32867 6.57958 7.18889 8.78226 Molecular weight = 217.03amu Principal moments of inertia in cm(-1) A = 0.052961 B = 0.007446 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.563115 B = 3759.346378 C = 4210.708388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.059 3.941 3 H 0.115 0.885 4 C -0.098 4.098 5 S -0.189 6.189 6 C 0.169 3.831 7 S -0.043 6.043 8 C 0.084 3.916 9 C -0.547 4.547 10 H 0.072 0.928 11 C 0.018 3.982 12 N -0.922 5.922 13 Si 0.980 3.020 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.260 1.260 17 N -0.550 5.550 18 H 0.107 0.893 19 H 0.052 0.948 20 H 0.049 0.951 21 H 0.135 0.865 22 H 0.135 0.865 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 0.432 13.426 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.057 4.057 3 H 0.132 0.868 4 C -0.248 4.248 5 S 0.037 5.963 6 C -0.238 4.238 7 S 0.189 5.811 8 C -0.065 4.065 9 C -0.587 4.587 10 H 0.090 0.910 11 C -0.184 4.184 12 N -0.560 5.560 13 Si 0.803 3.197 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.184 1.184 17 N -0.272 5.272 18 H 0.126 0.874 19 H 0.071 0.929 20 H 0.068 0.932 21 H 0.153 0.847 22 H 0.153 0.847 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.257 -0.689 13.300 13.320 hybrid contribution -1.104 1.628 -0.855 2.145 sum -1.361 0.939 12.445 12.554 Atomic orbital electron populations 1.21853 0.90729 1.02454 1.03759 1.22660 0.99060 1.00409 0.83521 0.86784 1.25171 1.02856 0.96260 1.00548 1.86393 1.66707 1.42464 1.00734 1.29180 0.97547 0.96900 1.00163 1.85514 1.63224 1.37526 0.94849 1.20869 0.97547 0.95981 0.92148 1.21022 1.33771 1.14040 0.89832 0.91020 1.25954 0.94237 0.95004 1.03180 1.70102 1.35396 1.21868 1.28643 0.85224 0.79278 0.78147 0.77094 1.19293 1.20197 1.18437 1.70750 1.14848 1.09909 1.31689 0.87409 0.92882 0.93219 0.84709 0.84718 0.96149 0.96157 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.20 71.98 0.66 -2.38 15 2 C 0.06 1.63 4.04 45.57 0.18 1.81 15 3 H 0.11 2.87 8.14 -2.39 -0.02 2.85 15 4 C -0.10 -2.08 7.08 72.21 0.51 -1.57 15 5 S -0.19 -5.83 23.28 -56.49 -1.31 -7.14 15 6 C 0.17 6.75 7.72 130.72 1.01 7.76 15 7 S -0.04 -1.92 22.23 -56.49 -1.26 -3.18 15 8 C 0.08 4.59 4.90 71.24 0.35 4.94 15 9 C -0.55 -31.10 9.13 25.60 0.23 -30.86 15 10 H 0.07 3.92 7.71 -2.91 -0.02 3.90 15 11 C 0.02 1.01 5.46 84.66 0.46 1.47 15 12 N -0.92 -54.94 13.29 21.45 0.28 -54.65 15 13 Si 0.98 43.17 29.54 68.60 2.03 45.19 15 14 H -0.27 -11.35 7.11 99.48 0.71 -10.65 15 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 16 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 17 N -0.55 -21.90 9.68 -327.39 -3.17 -25.07 15 18 H 0.11 1.61 8.14 -2.39 -0.02 1.59 15 19 H 0.05 1.44 8.14 -2.38 -0.02 1.42 15 20 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 21 H 0.13 2.18 7.66 -2.38 -0.02 2.16 15 22 H 0.13 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 24 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 25 H 0.27 15.00 8.31 -92.71 -0.77 14.22 15 Total: -1.00 -65.00 247.55 1.16 -63.84 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: 1.17 Total: -0.17 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 3.41 Total: -18.82 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -2.89 Total: -79.72 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -2.57 Total: -10.32 kcal Total: -65.00 1.16 -63.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992262.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.369 kcal (2) G-P(sol) polarization free energy of solvation -65.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds