Wall clock time and date at job start Mon Mar 30 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46608 * 2 1 4 4 C 1.50692 * 109.47108 * 240.00253 * 2 1 3 5 5 C 1.37643 * 120.12894 * 294.65422 * 4 2 1 6 6 C 1.38607 * 120.24745 * 180.02562 * 5 4 2 7 7 C 1.38658 * 120.50782 * 359.97438 * 6 5 4 8 8 C 1.37603 * 120.24444 * 0.02562 * 7 6 5 9 9 C 1.40698 * 120.12786 * 114.91099 * 4 2 1 10 10 C 1.41399 * 120.24904 * 0.02562 * 9 4 2 11 11 H 1.08002 * 119.99335 * 330.21302 * 10 9 4 12 12 C 1.39947 * 120.00182 * 150.20148 * 10 9 4 13 13 N 1.30817 * 119.99761 * 163.08890 * 12 10 9 14 14 Si 1.86803 * 119.99879 * 343.09548 * 12 10 9 15 15 H 1.48498 * 109.47124 * 90.44127 * 14 12 10 16 16 H 1.48506 * 109.46714 * 210.44024 * 14 12 10 17 17 H 1.48496 * 109.46977 * 330.43889 * 14 12 10 18 18 C 1.52994 * 109.47341 * 119.99927 * 2 1 3 19 19 C 1.53001 * 117.49963 * 248.75188 * 18 2 1 20 20 C 1.53001 * 117.50023 * 180.09097 * 18 2 1 21 21 H 1.09006 * 109.46865 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47626 * 299.99507 * 1 2 3 23 23 H 1.08999 * 109.47392 * 60.00317 * 1 2 3 24 24 H 1.08002 * 119.87227 * 359.97438 * 5 4 2 25 25 H 1.08003 * 119.74928 * 180.02562 * 6 5 4 26 26 H 1.07996 * 119.87957 * 180.02562 * 7 6 5 27 27 H 1.07993 * 120.12466 * 179.97438 * 8 7 6 28 28 H 0.97003 * 119.99756 * 180.02562 * 13 12 10 29 29 H 1.09006 * 115.55326 * 34.41640 * 18 2 1 30 30 H 1.08998 * 117.49932 * 359.97438 * 19 18 2 31 31 H 1.09001 * 117.50216 * 145.01697 * 19 18 2 32 32 H 1.08998 * 117.49673 * 214.97733 * 20 18 2 33 33 H 1.08994 * 117.49884 * 0.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 6 1.7944 -2.0558 -1.3970 6 6 2.2558 -2.7117 -2.5275 7 6 2.9605 -2.0226 -3.5028 8 6 3.2099 -0.6772 -3.3573 9 6 2.7510 -0.0019 -2.2109 10 6 3.0066 1.3792 -2.0479 11 1 2.3124 1.9952 -1.4955 12 6 4.1591 1.9477 -2.6019 13 7 4.2436 3.2451 -2.7469 14 14 5.5767 0.8539 -3.1346 15 1 5.3959 0.4667 -4.5567 16 1 6.8561 1.5922 -2.9813 17 1 5.6050 -0.3664 -2.2890 18 6 2.0400 -0.7212 1.2492 19 6 2.7393 0.1232 2.3164 20 6 3.5551 -0.8261 1.4353 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.2469 -2.6025 -0.6435 25 1 2.0642 -3.7675 -2.6502 26 1 3.3149 -2.5436 -4.3798 27 1 3.7594 -0.1424 -4.1178 28 1 5.0423 3.6391 -3.1313 29 1 1.4319 -1.5594 1.5894 30 1 2.8363 1.1924 2.1284 31 1 2.5915 -0.1597 3.3587 32 1 3.9436 -1.7332 1.8982 33 1 4.1884 -0.3810 0.6680 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260038472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:51 Heat of formation + Delta-G solvation = 25.894024 kcal Electronic energy + Delta-G solvation = -14486.130418 eV Core-core repulsion = 12283.500459 eV Total energy + Delta-G solvation = -2202.629959 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.58562 -36.49601 -33.55467 -32.32482 -30.36140 -28.39682 -25.07539 -23.34294 -21.80483 -21.75094 -20.30233 -18.69217 -17.31910 -15.85469 -14.98387 -14.49050 -14.28042 -13.72789 -13.37642 -12.80438 -12.63456 -12.11230 -11.96458 -11.68641 -11.45913 -11.00572 -10.90526 -10.73539 -10.68455 -10.48525 -10.02666 -9.78930 -9.60544 -9.51181 -9.08647 -8.95966 -7.55726 -7.46393 -6.89415 -4.43001 2.64456 2.73269 3.14063 3.23614 3.34432 4.01194 4.40151 4.56075 5.22913 5.40479 5.51720 5.58091 5.90475 5.99617 6.02444 6.10321 6.13335 6.20718 6.34530 6.36551 6.48303 6.58776 6.66580 6.75913 6.81795 6.87716 6.98811 7.09748 7.25778 7.51389 7.75610 7.80495 7.94977 8.19932 8.40680 8.71993 8.86295 10.12795 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.023416 B = 0.013623 C = 0.010979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.483623 B = 2054.903936 C = 2549.790682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.011 4.011 3 H 0.087 0.913 4 C -0.160 4.160 5 C -0.074 4.074 6 C -0.243 4.243 7 C -0.084 4.084 8 C -0.242 4.242 9 C 0.097 3.903 10 C -0.448 4.448 11 H 0.093 0.907 12 C 0.085 3.915 13 N -0.813 5.813 14 Si 0.910 3.090 15 H -0.271 1.271 16 H -0.294 1.294 17 H -0.247 1.247 18 C -0.131 4.131 19 C -0.189 4.189 20 C -0.173 4.173 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.283 0.717 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -5.384 4.699 7.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.092 4.092 6 C -0.262 4.262 7 C -0.102 4.102 8 C -0.261 4.261 9 C 0.094 3.906 10 C -0.477 4.477 11 H 0.111 0.889 12 C -0.133 4.133 13 N -0.438 5.438 14 Si 0.738 3.262 15 H -0.197 1.197 16 H -0.222 1.222 17 H -0.170 1.170 18 C -0.149 4.149 19 C -0.226 4.226 20 C -0.210 4.210 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.455 -5.104 4.655 7.059 hybrid contribution 0.752 -0.428 -0.393 0.950 sum -0.704 -5.531 4.263 7.019 Atomic orbital electron populations 1.21776 0.95984 1.00752 1.00656 1.19535 0.93901 0.99450 0.90078 0.89448 1.19527 1.07501 0.93033 0.96048 1.20411 0.98532 0.94127 0.96158 1.20381 1.09672 0.98079 0.98060 1.20582 0.97970 0.94394 0.97285 1.21100 1.10468 0.95005 0.99550 1.17607 0.90205 0.93002 0.89750 1.19436 1.06511 0.92156 1.29592 0.88934 1.26101 1.00184 0.95168 0.91814 1.69686 1.28764 1.12136 1.33224 0.86375 0.78672 0.81004 0.80161 1.19717 1.22189 1.17041 1.22294 0.94719 1.00789 0.97143 1.23005 1.06269 0.97929 0.95375 1.22842 0.94832 1.00617 1.02702 0.93510 0.93712 0.92802 0.89110 0.89238 0.89210 0.88178 0.90622 0.89064 0.88943 0.89945 0.89985 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.04 37.16 0.34 -1.98 16 2 C -0.01 -0.23 2.55 -91.78 -0.23 -0.46 16 3 H 0.09 1.90 5.59 -51.93 -0.29 1.61 16 4 C -0.16 -3.57 4.49 -103.91 -0.47 -4.04 16 5 C -0.07 -1.56 8.80 -39.66 -0.35 -1.90 16 6 C -0.24 -5.13 10.05 -39.29 -0.39 -5.53 16 7 C -0.08 -1.87 10.02 -39.66 -0.40 -2.27 16 8 C -0.24 -5.92 7.25 -38.87 -0.28 -6.21 16 9 C 0.10 2.43 5.11 -106.82 -0.55 1.88 16 10 C -0.45 -11.85 8.68 -37.74 -0.33 -12.18 16 11 H 0.09 2.55 6.69 -52.49 -0.35 2.20 16 12 C 0.09 2.23 5.42 -17.34 -0.09 2.14 16 13 N -0.81 -21.68 13.93 55.55 0.77 -20.91 16 14 Si 0.91 21.16 24.53 -169.99 -4.17 16.99 16 15 H -0.27 -6.17 6.48 56.52 0.37 -5.80 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.25 -5.89 7.01 56.52 0.40 -5.50 16 18 C -0.13 -2.26 4.57 -90.62 -0.41 -2.68 16 19 C -0.19 -2.98 10.18 -26.69 -0.27 -3.26 16 20 C -0.17 -3.02 9.87 -26.69 -0.26 -3.28 16 21 H 0.05 0.75 7.72 -51.93 -0.40 0.35 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.09 1.70 7.75 -52.49 -0.41 1.29 16 25 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 26 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.10 2.47 4.52 -52.49 -0.24 2.23 16 28 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 29 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 30 H 0.09 1.51 8.05 -51.93 -0.42 1.10 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 268.65 15.07 4.05 4.05 Total: -1.00 -26.54 268.65 -7.71 -34.26 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.66 Total: 5.37 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: -3.71 Total: -39.76 kcal Atomic # 7 Polarization: -21.68 SS G_CDS: 0.77 Total: -20.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.17 Total: 16.99 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.54 -7.71 -34.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260038472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.151 kcal (2) G-P(sol) polarization free energy of solvation -26.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds