Wall clock time and date at job start Mon Mar 30 2020 02:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46617 * 2 1 4 4 C 1.50695 * 109.46709 * 240.00302 * 2 1 3 5 5 H 1.08003 * 119.99646 * 239.99878 * 4 2 1 6 6 C 1.37878 * 120.00565 * 59.99592 * 4 2 1 7 7 N 1.31513 * 119.99460 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00386 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46968 * 60.00335 * 8 6 4 10 10 H 1.48495 * 109.47295 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47527 * 300.00623 * 8 6 4 12 12 C 1.52994 * 109.47045 * 119.99908 * 2 1 3 13 13 H 1.09004 * 115.55456 * 34.33307 * 12 2 1 14 14 C 1.52999 * 117.52010 * 248.62509 * 12 2 1 15 15 C 1.53001 * 60.00190 * 252.52264 * 14 12 2 16 16 H 1.09002 * 117.49822 * 252.51020 * 15 14 12 17 17 C 1.50701 * 117.51956 * 107.47765 * 15 14 12 18 18 C 1.38241 * 119.99764 * 351.01714 * 17 15 14 19 19 C 1.38238 * 119.99508 * 179.74235 * 18 17 15 20 20 C 1.38236 * 120.00136 * 0.52478 * 19 18 17 21 21 C 1.38233 * 119.99735 * 359.74576 * 20 19 18 22 22 C 1.38228 * 119.99966 * 171.28123 * 17 15 14 23 23 H 1.09010 * 109.46917 * 300.00179 * 1 2 3 24 24 H 1.08998 * 109.47628 * 59.99779 * 1 2 3 25 25 H 1.08997 * 109.47455 * 180.02562 * 1 2 3 26 26 H 0.97004 * 119.99885 * 179.97438 * 7 6 4 27 27 H 1.09001 * 117.50150 * 145.03523 * 14 12 2 28 28 H 1.08995 * 117.49529 * 0.02562 * 14 12 2 29 29 H 1.07992 * 119.99959 * 359.97438 * 18 17 15 30 30 H 1.08000 * 119.99615 * 180.29083 * 19 18 17 31 31 H 1.07994 * 119.99823 * 179.76641 * 20 19 18 32 32 H 1.08005 * 119.99713 * 179.97438 * 21 20 19 33 33 H 1.07998 * 120.00238 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3222 -1.1195 -4.0080 9 1 1.8277 -2.5198 -4.0082 10 1 1.8276 -0.4192 -5.2205 11 1 3.8072 -1.1190 -4.0079 12 6 2.0400 -0.7212 1.2492 13 1 1.4311 -1.5585 1.5902 14 6 2.7419 0.1222 2.3154 15 6 3.5550 -0.8281 1.4342 16 1 3.9428 -1.7357 1.8969 17 6 4.4306 -0.2149 0.3719 18 6 4.3398 1.1369 0.0969 19 6 5.1468 1.7003 -0.8738 20 6 6.0369 0.9101 -1.5769 21 6 6.1236 -0.4426 -1.3057 22 6 5.3207 -1.0050 -0.3311 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 0.7092 1.1618 -3.4844 27 1 2.5947 -0.1601 3.3579 28 1 2.8400 1.1913 2.1272 29 1 3.6412 1.7532 0.6429 30 1 5.0792 2.7572 -1.0855 31 1 6.6646 1.3497 -2.3379 32 1 6.8187 -1.0600 -1.8553 33 1 5.3883 -2.0619 -0.1194 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061519.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:28 Heat of formation + Delta-G solvation = 40.585930 kcal Electronic energy + Delta-G solvation = -14664.700451 eV Core-core repulsion = 12462.707581 eV Total energy + Delta-G solvation = -2201.992871 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.07296 -36.53990 -33.17090 -30.37366 -30.05048 -29.27123 -24.98662 -23.13732 -22.16507 -21.77394 -19.83246 -18.72318 -16.34084 -15.75822 -14.93660 -14.55804 -14.26611 -13.63684 -13.23082 -12.64248 -12.57912 -12.16372 -11.84014 -11.28546 -11.15550 -10.83094 -10.78344 -10.44671 -10.39415 -10.19721 -9.99899 -9.66978 -9.41051 -9.10719 -8.57180 -8.19904 -8.06068 -7.56208 -5.85753 -3.87250 2.18363 2.23482 3.39832 3.43097 3.47918 4.40184 4.56582 4.89994 5.38182 5.46266 5.57810 5.67193 5.72471 5.80977 5.86744 5.93995 6.19398 6.27404 6.37815 6.56802 6.73125 6.81891 6.82824 6.88068 6.98652 7.22198 7.26374 7.31015 7.43654 7.49723 7.82173 7.84499 8.06837 8.23498 8.58272 9.12792 9.75158 11.20675 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.016992 C = 0.011321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.258059 B = 1647.403404 C = 2472.613267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.068 3.932 3 H 0.032 0.968 4 C -0.485 4.485 5 H 0.053 0.947 6 C 0.064 3.936 7 N -0.894 5.894 8 Si 0.878 3.122 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.274 1.274 12 C -0.104 4.104 13 H 0.088 0.912 14 C -0.192 4.192 15 C -0.122 4.122 16 H 0.095 0.905 17 C -0.001 4.001 18 C -0.093 4.093 19 C -0.114 4.114 20 C -0.138 4.138 21 C -0.124 4.124 22 C -0.117 4.117 23 H 0.005 0.995 24 H 0.082 0.918 25 H 0.023 0.977 26 H 0.257 0.743 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -0.528 5.379 8.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.050 3.950 3 H 0.050 0.950 4 C -0.524 4.524 5 H 0.072 0.928 6 C -0.136 4.136 7 N -0.534 5.534 8 Si 0.706 3.294 9 H -0.206 1.206 10 H -0.216 1.216 11 H -0.200 1.200 12 C -0.122 4.122 13 H 0.106 0.894 14 C -0.229 4.229 15 C -0.140 4.140 16 H 0.113 0.887 17 C -0.001 4.001 18 C -0.111 4.111 19 C -0.132 4.132 20 C -0.156 4.156 21 C -0.142 4.142 22 C -0.136 4.136 23 H 0.024 0.976 24 H 0.101 0.899 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.488 -0.415 5.232 8.345 hybrid contribution 0.226 -0.581 -1.083 1.249 sum 6.714 -0.995 4.150 7.955 Atomic orbital electron populations 1.21791 0.98774 0.98810 0.99962 1.18388 0.92096 0.95354 0.89197 0.95030 1.20994 1.29621 1.11809 0.89938 0.92835 1.24829 0.95238 0.94983 0.98527 1.69865 1.37442 1.23169 1.22949 0.86857 0.79663 0.79770 0.83089 1.20612 1.21633 1.19991 1.22791 0.91334 1.00084 0.98015 0.89425 1.23164 1.06540 0.97652 0.95564 1.20990 0.94242 0.99737 0.99044 0.88683 1.18794 0.93460 0.92948 0.94931 1.20831 0.97552 0.94827 0.97883 1.20910 0.96536 0.99171 0.96617 1.20854 1.00274 0.94248 1.00257 1.20858 0.99999 0.95043 0.98262 1.20693 0.97118 0.98688 0.97052 0.97565 0.89892 0.95766 0.93346 0.90024 0.89050 0.86664 0.87211 0.87480 0.87419 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.95 37.16 0.33 -2.95 16 2 C 0.07 1.65 1.72 -91.78 -0.16 1.50 16 3 H 0.03 0.83 5.88 -51.93 -0.31 0.53 16 4 C -0.49 -13.00 6.74 -34.44 -0.23 -13.24 16 5 H 0.05 1.46 7.16 -52.48 -0.38 1.08 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 8 Si 0.88 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 11 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 12 C -0.10 -2.14 5.10 -90.62 -0.46 -2.60 16 13 H 0.09 1.73 8.11 -51.93 -0.42 1.31 16 14 C -0.19 -3.36 9.51 -26.73 -0.25 -3.62 16 15 C -0.12 -2.29 5.87 -91.77 -0.54 -2.83 16 16 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 17 C 0.00 -0.03 3.57 -104.62 -0.37 -0.40 16 18 C -0.09 -1.88 7.56 -39.58 -0.30 -2.18 16 19 C -0.11 -2.19 10.05 -39.58 -0.40 -2.59 16 20 C -0.14 -2.54 10.05 -39.58 -0.40 -2.93 16 21 C -0.12 -2.27 10.05 -39.58 -0.40 -2.67 16 22 C -0.12 -2.25 9.55 -39.59 -0.38 -2.63 16 23 H 0.01 0.12 8.14 -51.92 -0.42 -0.31 16 24 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.09 1.61 6.10 -51.93 -0.32 1.29 16 29 H 0.12 2.29 5.15 -52.49 -0.27 2.02 16 30 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 267.79 15.07 4.04 4.04 Total: -1.00 -28.65 267.79 -8.53 -37.19 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.52 Total: 2.35 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: -3.65 Total: -35.45 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.63 Total: -25.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.65 -8.53 -37.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061519.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.771 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds