Wall clock time and date at job start Mon Mar 30 2020 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47197 * 89.99842 * 8 6 4 10 10 H 1.48495 * 109.47693 * 210.00055 * 8 6 4 11 11 H 1.48508 * 109.46868 * 330.00146 * 8 6 4 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 C 1.38237 * 120.00001 * 59.72567 * 12 2 1 14 14 C 1.38237 * 120.00167 * 179.74562 * 13 12 2 15 15 C 1.38233 * 119.99638 * 0.52647 * 14 13 12 16 16 C 1.50698 * 119.99937 * 179.77198 * 15 14 13 17 17 C 1.53002 * 117.50020 * 8.59561 * 16 15 14 18 18 C 1.52999 * 60.00093 * 252.51328 * 17 16 15 19 19 C 1.38238 * 120.00258 * 359.74632 * 15 14 13 20 20 C 1.38233 * 119.99957 * 239.99778 * 12 2 1 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 25 25 H 1.08007 * 119.99774 * 359.97438 * 13 12 2 26 26 H 1.08001 * 120.00069 * 180.29825 * 14 13 12 27 27 H 1.08998 * 115.55249 * 154.31114 * 16 15 14 28 28 H 1.09002 * 117.49356 * 0.02562 * 17 16 15 29 29 H 1.08999 * 117.49856 * 145.01850 * 17 16 15 30 30 H 1.09003 * 117.49500 * 252.51004 * 18 17 16 31 31 H 1.08994 * 117.49984 * 107.48858 * 18 17 16 32 32 H 1.08003 * 120.00252 * 180.02562 * 19 15 14 33 33 H 1.07991 * 120.00142 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4872 -0.1404 -5.1121 11 1 3.6308 -1.7567 -3.7119 12 6 2.0323 -0.7104 1.2305 13 6 1.6937 -2.0322 1.4521 14 6 2.1588 -2.6854 2.5781 15 6 2.9535 -2.0136 3.4880 16 6 3.4563 -2.7242 4.7182 17 6 3.2253 -4.2341 4.8059 18 6 2.4126 -3.2834 5.6871 19 6 3.2875 -0.6902 3.2693 20 6 2.8271 -0.0386 2.1403 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.7087 1.1612 -3.4844 25 1 1.0688 -2.5556 0.7436 26 1 1.8982 -3.7195 2.7488 27 1 4.3788 -2.3303 5.1446 28 1 2.7100 -4.7135 3.9736 29 1 3.9961 -4.8339 5.2899 30 1 2.6488 -3.2578 6.7510 31 1 1.3624 -3.1373 5.4348 32 1 3.9088 -0.1654 3.9800 33 1 3.0877 0.9954 1.9697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260126039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:24 Heat of formation + Delta-G solvation = 32.240311 kcal Electronic energy + Delta-G solvation = -13814.008804 eV Core-core repulsion = 11611.654040 eV Total energy + Delta-G solvation = -2202.354764 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.18394 -36.76277 -34.04040 -31.27601 -30.20358 -28.19301 -25.11890 -23.40215 -22.60293 -21.88446 -20.45937 -19.26124 -16.41604 -16.24068 -15.07338 -14.71325 -14.15845 -14.01646 -13.40559 -12.80288 -12.62261 -12.27875 -12.02866 -11.49273 -11.36990 -11.07576 -10.88657 -10.82534 -10.61250 -10.45990 -10.21154 -10.12625 -9.91242 -9.35676 -8.96342 -8.36821 -8.21464 -7.56403 -6.00167 -4.06835 2.06301 2.11749 3.30224 3.36977 3.41115 3.93591 4.41592 4.60397 4.77762 4.99161 5.14015 5.30439 5.35569 5.56356 5.61359 5.71344 5.87446 6.03529 6.03924 6.15951 6.34205 6.37916 6.66437 6.74650 6.87833 7.02518 7.20072 7.22929 7.27425 7.40574 7.71847 7.79291 8.00064 8.10935 8.41225 8.95907 9.57700 11.05444 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.046053 B = 0.006768 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.843122 B = 4135.957160 C = 4365.842880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 H 0.034 0.966 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.032 4.032 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.088 4.088 16 C -0.104 4.104 17 C -0.182 4.182 18 C -0.175 4.175 19 C -0.117 4.117 20 C -0.130 4.130 21 H 0.028 0.972 22 H 0.008 0.992 23 H 0.085 0.915 24 H 0.260 0.740 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -5.710 11.854 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 H 0.052 0.948 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.032 4.032 13 C -0.127 4.127 14 C -0.143 4.143 15 C -0.088 4.088 16 C -0.122 4.122 17 C -0.218 4.218 18 C -0.212 4.212 19 C -0.135 4.135 20 C -0.148 4.148 21 H 0.047 0.953 22 H 0.027 0.973 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.139 0.861 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.475 -5.590 11.712 13.211 hybrid contribution 0.373 -0.444 -0.894 1.065 sum 2.848 -6.034 10.818 12.710 Atomic orbital electron populations 1.21782 0.97664 0.99246 1.00222 1.17909 0.92854 0.95440 0.88727 0.94800 1.21123 1.31095 1.12317 0.89879 0.92487 1.24960 0.95087 0.94999 0.98936 1.69884 1.36771 1.22896 1.23384 0.86587 0.79320 0.79408 0.82677 1.20667 1.21211 1.19903 1.20679 0.92999 0.93881 0.95600 1.21043 1.00188 0.94952 0.96514 1.20926 0.99152 0.99108 0.95128 1.18858 1.00523 0.94141 0.95234 1.20948 0.99725 0.94941 0.96614 1.23034 1.03424 0.92517 1.02866 1.22996 0.97539 1.04307 0.96382 1.20765 1.00965 0.93985 0.97789 1.21105 0.99369 0.99878 0.94473 0.95316 0.97288 0.89657 0.92968 0.86140 0.87169 0.87657 0.88380 0.88960 0.89010 0.88710 0.87263 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.78 37.16 0.33 -2.87 16 2 C 0.07 1.75 2.48 -92.92 -0.23 1.51 16 3 H 0.03 0.92 7.88 -51.93 -0.41 0.51 16 4 C -0.51 -13.89 8.25 -34.44 -0.28 -14.17 16 5 H 0.06 1.57 7.61 -52.48 -0.40 1.17 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.71 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C -0.03 -0.70 4.73 -104.62 -0.50 -1.19 16 13 C -0.11 -2.22 8.72 -39.58 -0.35 -2.57 16 14 C -0.13 -2.20 9.30 -39.58 -0.37 -2.57 16 15 C -0.09 -1.45 5.61 -104.62 -0.59 -2.04 16 16 C -0.10 -1.37 6.04 -91.77 -0.55 -1.93 16 17 C -0.18 -2.08 9.86 -26.73 -0.26 -2.34 16 18 C -0.18 -2.00 10.16 -26.73 -0.27 -2.27 16 19 C -0.12 -2.01 9.74 -39.58 -0.39 -2.40 16 20 C -0.13 -2.57 9.67 -39.58 -0.38 -2.96 16 21 H 0.03 0.66 7.37 -51.93 -0.38 0.28 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.12 2.48 7.56 -52.48 -0.40 2.08 16 26 H 0.11 1.67 6.02 -52.49 -0.32 1.36 16 27 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.10 1.15 6.18 -51.93 -0.32 0.83 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 33 H 0.11 2.15 7.95 -52.49 -0.42 1.73 16 LS Contribution 274.54 15.07 4.14 4.14 Total: -1.00 -28.34 274.54 -8.82 -37.16 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.63 Total: 1.30 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: -3.94 Total: -34.19 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.63 Total: -24.71 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.34 -8.82 -37.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260126039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.402 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds