Wall clock time and date at job start Mon Mar 30 2020 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47197 * 89.99842 * 8 6 4 10 10 H 1.48495 * 109.47693 * 210.00055 * 8 6 4 11 11 H 1.48508 * 109.46868 * 330.00146 * 8 6 4 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 C 1.38237 * 120.00001 * 59.72567 * 12 2 1 14 14 C 1.38237 * 120.00167 * 179.74562 * 13 12 2 15 15 C 1.38233 * 119.99638 * 0.52647 * 14 13 12 16 16 C 1.50698 * 119.99937 * 179.77198 * 15 14 13 17 17 C 1.53002 * 117.50020 * 8.59561 * 16 15 14 18 18 C 1.52999 * 60.00093 * 252.51328 * 17 16 15 19 19 C 1.38238 * 120.00258 * 359.74632 * 15 14 13 20 20 C 1.38233 * 119.99957 * 239.99778 * 12 2 1 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 25 25 H 1.08007 * 119.99774 * 359.97438 * 13 12 2 26 26 H 1.08001 * 120.00069 * 180.29825 * 14 13 12 27 27 H 1.08998 * 115.55249 * 154.31114 * 16 15 14 28 28 H 1.09002 * 117.49356 * 0.02562 * 17 16 15 29 29 H 1.08999 * 117.49856 * 145.01850 * 17 16 15 30 30 H 1.09003 * 117.49500 * 252.51004 * 18 17 16 31 31 H 1.08994 * 117.49984 * 107.48858 * 18 17 16 32 32 H 1.08003 * 120.00252 * 180.02562 * 19 15 14 33 33 H 1.07991 * 120.00142 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4872 -0.1404 -5.1121 11 1 3.6308 -1.7567 -3.7119 12 6 2.0323 -0.7104 1.2305 13 6 1.6937 -2.0322 1.4521 14 6 2.1588 -2.6854 2.5781 15 6 2.9535 -2.0136 3.4880 16 6 3.4563 -2.7242 4.7182 17 6 3.2253 -4.2341 4.8059 18 6 2.4126 -3.2834 5.6871 19 6 3.2875 -0.6902 3.2693 20 6 2.8271 -0.0386 2.1403 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.7087 1.1612 -3.4844 25 1 1.0688 -2.5556 0.7436 26 1 1.8982 -3.7195 2.7488 27 1 4.3788 -2.3303 5.1446 28 1 2.7100 -4.7135 3.9736 29 1 3.9961 -4.8339 5.2899 30 1 2.6488 -3.2578 6.7510 31 1 1.3624 -3.1373 5.4348 32 1 3.9088 -0.1654 3.9800 33 1 3.0877 0.9954 1.9697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260126039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:24 Heat of formation + Delta-G solvation = 19.261497 kcal Electronic energy + Delta-G solvation = -13814.571607 eV Core-core repulsion = 11611.654040 eV Total energy + Delta-G solvation = -2202.917567 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55559 -37.99929 -35.85415 -33.15740 -31.66248 -29.82252 -27.22793 -24.86905 -23.83887 -22.98064 -22.00550 -20.74580 -18.30347 -17.68077 -16.71617 -16.11787 -15.72162 -15.41580 -14.89663 -14.41106 -14.21472 -13.83385 -13.59555 -13.27757 -12.85324 -12.74935 -12.40073 -12.36537 -12.19656 -12.15729 -11.82664 -11.39641 -11.21347 -11.08387 -10.95175 -10.48276 -9.68082 -9.05461 -8.10552 -6.25014 0.61211 0.64657 1.40291 1.40917 1.51548 2.41743 2.83849 3.16095 3.29521 3.74803 4.01630 4.10994 4.22209 4.27612 4.38819 4.43898 4.70344 4.81827 4.84307 4.89147 5.00310 5.03390 5.17759 5.23360 5.29766 5.33946 5.38124 5.53097 5.68591 5.71330 5.80728 6.04237 6.12607 6.28821 6.38704 6.83429 7.42779 8.93766 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.046053 B = 0.006768 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.843122 B = 4135.957160 C = 4365.842880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.069 3.931 3 H 0.003 0.997 4 C -0.521 4.521 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.272 1.272 12 C -0.064 4.064 13 C -0.123 4.123 14 C -0.124 4.124 15 C -0.078 4.078 16 C -0.124 4.124 17 C -0.175 4.175 18 C -0.164 4.164 19 C -0.115 4.115 20 C -0.143 4.143 21 H 0.031 0.969 22 H 0.023 0.977 23 H 0.059 0.941 24 H 0.262 0.738 25 H 0.108 0.892 26 H 0.135 0.865 27 H 0.123 0.877 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -7.352 13.640 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 H 0.021 0.979 4 C -0.559 4.559 5 H 0.067 0.933 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.196 1.196 12 C -0.064 4.064 13 C -0.141 4.141 14 C -0.142 4.142 15 C -0.078 4.078 16 C -0.142 4.142 17 C -0.211 4.211 18 C -0.201 4.201 19 C -0.132 4.132 20 C -0.161 4.161 21 H 0.050 0.950 22 H 0.042 0.958 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.126 0.874 26 H 0.153 0.847 27 H 0.141 0.859 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.159 0.841 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.519 -7.236 13.506 15.721 hybrid contribution 0.066 0.049 -1.339 1.342 sum 3.584 -7.187 12.167 14.579 Atomic orbital electron populations 1.21615 0.97448 0.99138 0.99602 1.17760 0.93146 0.93913 0.90097 0.97900 1.21376 1.31099 1.12239 0.91218 0.93285 1.25732 0.95270 0.95712 1.01804 1.70010 1.37601 1.24030 1.24046 0.85598 0.78830 0.78424 0.79076 1.19875 1.20670 1.19625 1.20438 0.95618 0.94885 0.95492 1.21004 1.00940 0.94478 0.97715 1.21166 0.98728 1.00195 0.94112 1.19290 0.98632 0.93935 0.95917 1.21019 1.01181 0.96155 0.95842 1.23145 1.03727 0.91494 1.02754 1.23072 0.96621 1.03024 0.97401 1.21084 1.00554 0.94458 0.97137 1.21207 0.99483 1.00147 0.95255 0.95029 0.95797 0.92178 0.92868 0.87364 0.84722 0.85921 0.88879 0.86758 0.86643 0.89544 0.84126 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.78 71.98 0.63 -5.44 16 2 C 0.07 3.65 2.48 -12.29 -0.03 3.62 16 3 H 0.00 0.16 7.88 -2.39 -0.02 0.14 16 4 C -0.52 -29.51 8.25 25.60 0.21 -29.30 16 5 H 0.05 2.78 7.61 -2.91 -0.02 2.76 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.62 11.32 21.44 0.24 -53.37 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C -0.06 -2.91 4.73 -19.87 -0.09 -3.00 16 13 C -0.12 -5.07 8.72 22.27 0.19 -4.87 16 14 C -0.12 -4.17 9.30 22.27 0.21 -3.96 16 15 C -0.08 -2.38 5.61 -19.87 -0.11 -2.49 16 16 C -0.12 -2.79 6.04 -11.54 -0.07 -2.86 16 17 C -0.17 -3.28 9.86 30.59 0.30 -2.98 16 18 C -0.16 -3.08 10.16 30.60 0.31 -2.77 16 19 C -0.11 -3.72 9.74 22.27 0.22 -3.50 16 20 C -0.14 -5.66 9.67 22.27 0.22 -5.45 16 21 H 0.03 1.51 7.37 -2.39 -0.02 1.49 16 22 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.11 4.59 7.56 -2.91 -0.02 4.57 16 26 H 0.14 3.78 6.02 -2.91 -0.02 3.76 16 27 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.09 1.85 6.18 -2.39 -0.01 1.84 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.11 4.40 7.95 -2.92 -0.02 4.37 16 Total: -1.00 -61.84 274.54 5.78 -56.06 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.08 Total: 12.81 kcal Atomic # 6 Polarization: -64.24 SS G_CDS: 2.43 Total: -61.81 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.24 Total: -53.37 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -61.84 5.78 -56.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260126039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.323 kcal (2) G-P(sol) polarization free energy of solvation -61.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds