Wall clock time and date at job start Mon Mar 30 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39907 * 109.46872 * 2 1 4 4 F 1.39894 * 109.47256 * 240.00034 * 2 1 3 5 5 C 1.50699 * 109.46959 * 119.99637 * 2 1 3 6 6 C 1.34332 * 126.44280 * 90.00343 * 5 2 1 7 7 N 1.34471 * 107.66856 * 180.02562 * 6 5 2 8 8 C 1.30253 * 108.70602 * 0.02562 * 7 6 5 9 9 C 1.50696 * 125.62276 * 180.26292 * 8 7 6 10 10 C 1.50702 * 109.47075 * 89.69163 * 9 8 7 11 11 H 1.08000 * 120.00121 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99849 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00257 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99981 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46884 * 89.99985 * 14 12 10 16 16 H 1.48499 * 109.47150 * 209.99949 * 14 12 10 17 17 H 1.48507 * 109.46776 * 330.00177 * 14 12 10 18 18 O 1.33974 * 108.75653 * 359.97438 * 8 7 6 19 19 H 1.09000 * 109.47334 * 300.00061 * 1 2 3 20 20 H 1.09003 * 109.46851 * 60.00081 * 1 2 3 21 21 H 1.08999 * 109.46637 * 179.97438 * 1 2 3 22 22 H 1.08005 * 126.16232 * 0.02562 * 6 5 2 23 23 H 1.09003 * 109.46949 * 209.69285 * 9 8 7 24 24 H 1.09000 * 109.47067 * 329.69047 * 9 8 7 25 25 H 0.96995 * 120.00150 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7103 1.2305 6 6 2.2983 -2.0223 1.3418 7 7 2.7221 -2.2477 2.5979 8 6 2.7207 -1.1191 3.2481 9 6 3.1331 -0.9338 4.6857 10 6 4.6095 -0.6389 4.7507 11 1 5.1910 -0.5901 3.8419 12 6 5.2180 -0.4314 5.9705 13 7 4.5098 -0.4903 7.0771 14 14 7.0480 -0.0651 6.0511 15 1 7.2630 1.4022 5.9740 16 1 7.5999 -0.5798 7.3301 17 1 7.7358 -0.7267 4.9132 18 8 2.2982 -0.1490 2.4263 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 2.1912 -2.7627 0.5627 23 1 2.5770 -0.1023 5.1189 24 1 2.9194 -1.8445 5.2452 25 1 4.9379 -0.3447 7.9352 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260126129.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:57 Heat of formation + Delta-G solvation = -108.034467 kcal Electronic energy + Delta-G solvation = -14294.742348 eV Core-core repulsion = 11330.816278 eV Total energy + Delta-G solvation = -2963.926070 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.065 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.25242 -48.28358 -44.40760 -35.99883 -35.55760 -33.97130 -31.97888 -29.16418 -26.02010 -24.62508 -23.07610 -22.08304 -19.26262 -18.83898 -18.54764 -17.86934 -17.30157 -17.06250 -16.48807 -15.21044 -14.86958 -14.77190 -14.59432 -14.44191 -14.12559 -13.74713 -13.51292 -13.30622 -12.95627 -12.73632 -12.61028 -12.46411 -12.14951 -11.72904 -11.62170 -10.71021 -9.93548 -8.33702 -6.47903 0.18814 1.28804 1.39968 1.41140 1.51650 1.60294 2.36311 2.60876 2.91342 3.00030 3.23500 3.42901 3.51155 3.91946 4.45075 4.52585 4.62472 4.83895 4.94083 4.98340 5.10317 5.24028 5.55641 5.86853 6.56524 6.68272 7.20973 8.76854 Molecular weight = 217.07amu Principal moments of inertia in cm(-1) A = 0.049140 B = 0.007074 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.658911 B = 3956.945332 C = 4095.660548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.396 3.604 3 F -0.201 7.201 4 F -0.180 7.180 5 C -0.169 4.169 6 C 0.014 3.986 7 N -0.523 5.523 8 C 0.249 3.751 9 C 0.110 3.890 10 C -0.547 4.547 11 H 0.050 0.950 12 C 0.020 3.980 13 N -0.917 5.917 14 Si 0.972 3.028 15 H -0.268 1.268 16 H -0.271 1.271 17 H -0.271 1.271 18 O -0.199 6.199 19 H 0.093 0.907 20 H 0.117 0.883 21 H 0.112 0.888 22 H 0.222 0.778 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 0.668 -12.977 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.359 3.641 3 F -0.182 7.182 4 F -0.161 7.161 5 C -0.222 4.222 6 C -0.126 4.126 7 N -0.252 5.252 8 C 0.044 3.956 9 C 0.072 3.928 10 C -0.585 4.585 11 H 0.068 0.932 12 C -0.180 4.180 13 N -0.555 5.555 14 Si 0.795 3.205 15 H -0.194 1.194 16 H -0.196 1.196 17 H -0.196 1.196 18 O -0.087 6.087 19 H 0.112 0.888 20 H 0.136 0.864 21 H 0.131 0.869 22 H 0.238 0.762 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.623 0.176 -12.529 14.667 hybrid contribution 0.924 0.784 -0.065 1.213 sum -6.699 0.960 -12.594 14.297 Atomic orbital electron populations 1.22830 0.85705 1.07746 1.07132 1.18883 0.95400 0.72939 0.76884 1.93048 1.91020 1.37549 1.96600 1.93059 1.91163 1.81070 1.50758 1.24038 1.14320 0.95345 0.88509 1.23685 0.99017 0.94903 0.94993 1.70610 1.21504 1.27226 1.05894 1.27536 0.91759 0.79981 0.96326 1.17834 0.96678 0.99406 0.78901 1.21062 0.92819 1.51202 0.93443 0.93204 1.25781 1.03626 0.94023 0.94615 1.70006 1.38251 1.48716 0.98523 0.85343 0.78290 0.78841 0.77978 1.19359 1.19623 1.19610 1.84436 1.64008 1.40435 1.19817 0.88824 0.86425 0.86905 0.76190 0.93939 0.92707 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.37 71.98 0.67 -2.32 15 2 C 0.40 10.58 2.51 29.85 0.07 10.66 15 3 F -0.20 -6.26 17.05 44.97 0.77 -5.50 15 4 F -0.18 -4.55 16.78 44.97 0.75 -3.79 15 5 C -0.17 -5.90 6.24 24.79 0.15 -5.75 15 6 C 0.01 0.47 11.48 83.40 0.96 1.43 15 7 N -0.52 -23.19 11.29 -303.82 -3.43 -26.62 15 8 C 0.25 11.82 7.53 88.34 0.67 12.48 15 9 C 0.11 5.79 5.60 29.10 0.16 5.95 15 10 C -0.55 -31.15 9.09 25.60 0.23 -30.91 15 11 H 0.05 2.88 7.74 -2.91 -0.02 2.85 15 12 C 0.02 1.12 5.46 84.66 0.46 1.58 15 13 N -0.92 -52.49 13.29 21.45 0.28 -52.20 15 14 Si 0.97 43.45 29.54 68.60 2.03 45.47 15 15 H -0.27 -11.56 7.11 99.48 0.71 -10.86 15 16 H -0.27 -11.56 7.11 99.48 0.71 -10.86 15 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 18 O -0.20 -8.70 10.77 -3.76 -0.04 -8.74 15 19 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 20 H 0.12 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.11 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.22 5.56 8.06 -2.91 -0.02 5.54 15 23 H 0.04 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.05 3.00 8.14 -2.39 -0.02 2.98 15 25 H 0.27 14.55 8.31 -92.71 -0.77 13.78 15 Total: -1.00 -64.42 242.13 4.95 -59.46 By element: Atomic # 1 Polarization: -2.41 SS G_CDS: 1.21 Total: -1.20 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 3.38 Total: -6.88 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -3.15 Total: -78.82 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.04 Total: -8.74 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 1.52 Total: -9.29 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -64.42 4.95 -59.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260126129.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.571 kcal (2) G-P(sol) polarization free energy of solvation -64.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds