Wall clock time and date at job start Mon Mar 30 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46908 * 270.00126 * 3 2 1 5 5 H 1.48502 * 109.47379 * 29.99918 * 3 2 1 6 6 H 1.48499 * 109.47260 * 150.00020 * 3 2 1 7 7 C 1.37880 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00338 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47510 * 179.97438 * 9 7 2 11 11 C 1.34183 * 126.49710 * 265.00108 * 10 9 7 12 12 N 1.36970 * 109.92161 * 179.75192 * 11 10 9 13 13 H 0.97002 * 125.07481 * 180.02562 * 12 11 10 14 14 C 1.37699 * 109.85489 * 0.40626 * 12 11 10 15 15 C 1.39097 * 133.43776 * 179.88288 * 14 12 11 16 16 C 1.38203 * 119.73703 * 179.64684 * 15 14 12 17 17 O 1.35943 * 119.73416 * 180.02562 * 16 15 14 18 18 C 1.39286 * 120.54165 * 0.02562 * 16 15 14 19 19 C 1.36564 * 120.47329 * 0.02562 * 18 16 15 20 20 C 1.39640 * 119.84466 * 359.97438 * 19 18 16 21 21 H 0.96997 * 119.99633 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47136 * 59.99768 * 9 7 2 23 23 H 1.09001 * 109.47256 * 299.99893 * 9 7 2 24 24 H 1.07999 * 125.04221 * 359.96305 * 11 10 9 25 25 H 1.08002 * 120.13239 * 359.69466 * 15 14 12 26 26 H 0.96695 * 114.00082 * 269.99548 * 17 16 15 27 27 H 1.07994 * 119.76351 * 179.97438 * 18 16 15 28 28 H 1.08004 * 120.07248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6149 0.0013 11 6 4.3689 -3.3348 1.0766 12 7 4.7691 -4.5862 0.6891 13 1 5.0710 -5.2857 1.2894 14 6 4.6869 -4.7001 -0.6807 15 6 4.9673 -5.7295 -1.5733 16 6 4.7709 -5.5351 -2.9274 17 8 5.0444 -6.5413 -3.7997 18 6 4.2949 -4.3167 -3.4059 19 6 4.0157 -3.2953 -2.5434 20 6 4.2076 -3.4721 -1.1716 21 1 -0.4849 0.8401 0.0004 22 1 3.8752 -0.6797 0.8894 23 1 3.8745 -0.6810 -0.8905 24 1 4.3400 -2.9813 2.0967 25 1 5.3362 -6.6771 -1.2095 26 1 5.9530 -6.5391 -4.1303 27 1 4.1464 -4.1784 -4.4666 28 1 3.6473 -2.3531 -2.9215 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260133269.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:44 Heat of formation + Delta-G solvation = 8.565804 kcal Electronic energy + Delta-G solvation = -13668.777714 eV Core-core repulsion = 11264.137341 eV Total energy + Delta-G solvation = -2404.640373 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.75834 -38.20362 -35.01494 -33.48159 -31.64382 -29.60216 -28.32038 -26.80292 -22.65488 -22.41876 -21.42359 -18.74940 -17.92519 -17.10561 -16.69306 -15.68453 -15.10404 -14.30032 -14.21868 -13.71245 -13.46525 -12.95298 -12.78919 -12.24901 -11.85696 -11.48316 -11.07298 -10.92810 -10.47665 -10.39859 -10.16314 -9.93238 -9.35133 -8.86642 -8.52275 -7.71176 -6.98259 -6.01081 -3.98987 1.46620 1.95740 3.31508 3.32681 3.39792 3.42367 3.53084 4.20776 4.46330 4.55930 5.16905 5.28817 5.40145 5.52464 5.71653 5.82654 6.08513 6.15484 6.39170 6.53674 6.75769 6.89687 7.06715 7.07732 7.22480 7.45682 7.65113 7.76853 7.89003 8.03638 8.59535 9.06445 9.59813 11.12275 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.040040 B = 0.007792 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.125449 B = 3592.592981 C = 3939.131309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.046 3.954 10 C -0.101 4.101 11 C 0.014 3.986 12 N -0.601 5.601 13 H 0.409 0.591 14 C 0.107 3.893 15 C -0.167 4.167 16 C 0.113 3.887 17 O -0.501 6.501 18 C -0.184 4.184 19 C -0.036 4.036 20 C -0.106 4.106 21 H 0.263 0.737 22 H 0.026 0.974 23 H 0.022 0.978 24 H 0.166 0.834 25 H 0.118 0.882 26 H 0.382 0.618 27 H 0.123 0.877 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.537 -8.422 -2.254 15.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.090 0.910 9 C 0.009 3.991 10 C -0.107 4.107 11 C -0.108 4.108 12 N -0.205 5.205 13 H 0.244 0.756 14 C -0.001 4.001 15 C -0.189 4.189 16 C 0.068 3.932 17 O -0.310 6.310 18 C -0.203 4.203 19 C -0.054 4.054 20 C -0.111 4.111 21 H 0.073 0.927 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.183 0.817 25 H 0.136 0.864 26 H 0.237 0.763 27 H 0.141 0.859 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.807 -8.502 -2.025 14.690 hybrid contribution 0.837 0.575 0.247 1.045 sum 12.643 -7.927 -1.777 15.028 Atomic orbital electron populations 1.69913 1.06270 1.26802 1.51212 1.25009 0.94710 0.98939 0.94754 0.86822 0.80360 0.83788 0.78614 1.20207 1.21422 1.18941 1.21014 0.88654 0.94467 1.50474 0.90963 1.18177 0.96805 0.87259 0.96909 1.20785 1.02090 0.98084 0.89751 1.21563 1.05529 0.84278 0.99429 1.41645 1.60117 1.13961 1.04792 0.75584 1.17981 1.02513 0.95812 0.83824 1.19981 1.09158 0.97873 0.91861 1.17908 1.00486 0.87352 0.87415 1.84834 1.34432 1.49629 1.62101 1.20763 1.06711 0.92847 1.00027 1.20281 0.95289 0.98712 0.91126 1.19282 1.04395 0.93673 0.93764 0.92738 0.95614 0.95973 0.81675 0.86419 0.76306 0.85938 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.08 15 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 15 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 15 7 C -0.51 -14.49 9.65 -34.44 -0.33 -14.82 15 8 H 0.07 2.29 7.98 -52.49 -0.42 1.87 15 9 C 0.05 1.11 4.57 -29.04 -0.13 0.98 15 10 C -0.10 -2.16 5.51 -102.70 -0.57 -2.72 15 11 C 0.01 0.26 11.74 -16.68 -0.20 0.06 15 12 N -0.60 -9.31 6.08 -10.63 -0.06 -9.37 15 13 H 0.41 4.66 8.96 -40.82 -0.37 4.29 15 14 C 0.11 1.88 7.27 -83.99 -0.61 1.27 15 15 C -0.17 -2.60 10.01 -39.28 -0.39 -3.00 15 16 C 0.11 1.76 6.69 -39.20 -0.26 1.50 15 17 O -0.50 -6.54 13.49 -19.56 -0.26 -6.80 15 18 C -0.18 -2.99 9.91 -39.80 -0.39 -3.39 15 19 C -0.04 -0.67 10.04 -39.66 -0.40 -1.07 15 20 C -0.11 -2.14 6.35 -105.10 -0.67 -2.81 15 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 22 H 0.03 0.60 7.20 -51.93 -0.37 0.22 15 23 H 0.02 0.52 7.57 -51.93 -0.39 0.13 15 24 H 0.17 2.50 8.06 -52.49 -0.42 2.08 15 25 H 0.12 1.54 8.06 -52.49 -0.42 1.11 15 26 H 0.38 2.93 9.06 45.56 0.41 3.35 15 27 H 0.12 1.73 8.06 -52.49 -0.42 1.30 15 28 H 0.13 2.41 8.06 -52.48 -0.42 1.98 15 LS Contribution 250.27 15.07 3.77 3.77 Total: -1.00 -33.43 250.27 -6.50 -39.93 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.00 Total: 5.05 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -4.05 Total: -22.16 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.71 Total: -36.46 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.26 Total: -6.80 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.43 -6.50 -39.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133269.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.495 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds