Wall clock time and date at job start Mon Mar 30 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46908 * 270.00126 * 3 2 1 5 5 H 1.48502 * 109.47379 * 29.99918 * 3 2 1 6 6 H 1.48499 * 109.47260 * 150.00020 * 3 2 1 7 7 C 1.37880 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00338 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47510 * 179.97438 * 9 7 2 11 11 C 1.34183 * 126.49710 * 265.00108 * 10 9 7 12 12 N 1.36970 * 109.92161 * 179.75192 * 11 10 9 13 13 H 0.97002 * 125.07481 * 180.02562 * 12 11 10 14 14 C 1.37699 * 109.85489 * 0.40626 * 12 11 10 15 15 C 1.39097 * 133.43776 * 179.88288 * 14 12 11 16 16 C 1.38203 * 119.73703 * 179.64684 * 15 14 12 17 17 O 1.35943 * 119.73416 * 180.02562 * 16 15 14 18 18 C 1.39286 * 120.54165 * 0.02562 * 16 15 14 19 19 C 1.36564 * 120.47329 * 0.02562 * 18 16 15 20 20 C 1.39640 * 119.84466 * 359.97438 * 19 18 16 21 21 H 0.96997 * 119.99633 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47136 * 59.99768 * 9 7 2 23 23 H 1.09001 * 109.47256 * 299.99893 * 9 7 2 24 24 H 1.07999 * 125.04221 * 359.96305 * 11 10 9 25 25 H 1.08002 * 120.13239 * 359.69466 * 15 14 12 26 26 H 0.96695 * 114.00082 * 269.99548 * 17 16 15 27 27 H 1.07994 * 119.76351 * 179.97438 * 18 16 15 28 28 H 1.08004 * 120.07248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6149 0.0013 11 6 4.3689 -3.3348 1.0766 12 7 4.7691 -4.5862 0.6891 13 1 5.0710 -5.2857 1.2894 14 6 4.6869 -4.7001 -0.6807 15 6 4.9673 -5.7295 -1.5733 16 6 4.7709 -5.5351 -2.9274 17 8 5.0444 -6.5413 -3.7997 18 6 4.2949 -4.3167 -3.4059 19 6 4.0157 -3.2953 -2.5434 20 6 4.2076 -3.4721 -1.1716 21 1 -0.4849 0.8401 0.0004 22 1 3.8752 -0.6797 0.8894 23 1 3.8745 -0.6810 -0.8905 24 1 4.3400 -2.9813 2.0967 25 1 5.3362 -6.6771 -1.2095 26 1 5.9530 -6.5391 -4.1303 27 1 4.1464 -4.1784 -4.4666 28 1 3.6473 -2.3531 -2.9215 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260133269.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:44 Heat of formation + Delta-G solvation = -15.776373 kcal Electronic energy + Delta-G solvation = -13669.833270 eV Core-core repulsion = 11264.137341 eV Total energy + Delta-G solvation = -2405.695929 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.09334 -39.36666 -36.23959 -35.43712 -33.44563 -31.07414 -29.77396 -28.38799 -24.53081 -23.82105 -22.69364 -20.20802 -19.19156 -18.88995 -18.37612 -16.97883 -16.29639 -16.22513 -15.56031 -15.09424 -14.85274 -14.70726 -14.26682 -13.98882 -13.61471 -12.84340 -12.75791 -12.28265 -12.22525 -12.08134 -11.76819 -11.57161 -11.32921 -10.73493 -10.31540 -9.02929 -8.39478 -8.23382 -6.27831 0.16778 0.64377 1.40436 1.41664 1.54123 1.88702 2.28789 2.40263 2.88618 3.10380 3.44274 3.89210 4.07871 4.27948 4.40606 4.51406 4.76880 4.84876 5.00970 5.07125 5.13185 5.40430 5.53550 5.60689 5.65805 5.79782 5.97371 6.21908 6.37464 6.77341 6.85424 6.96819 7.35285 8.93160 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.040040 B = 0.007792 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.125449 B = 3592.592981 C = 3939.131309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.512 4.512 8 H 0.021 0.979 9 C 0.056 3.944 10 C -0.162 4.162 11 C 0.040 3.960 12 N -0.583 5.583 13 H 0.431 0.569 14 C 0.100 3.900 15 C -0.161 4.161 16 C 0.120 3.880 17 O -0.502 6.502 18 C -0.178 4.178 19 C -0.066 4.066 20 C -0.141 4.141 21 H 0.266 0.734 22 H 0.036 0.964 23 H 0.020 0.980 24 H 0.193 0.807 25 H 0.150 0.850 26 H 0.409 0.591 27 H 0.142 0.858 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.893 -9.329 -2.072 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.192 4.192 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.550 4.550 8 H 0.039 0.961 9 C 0.019 3.981 10 C -0.168 4.168 11 C -0.085 4.085 12 N -0.188 5.188 13 H 0.271 0.729 14 C -0.009 4.009 15 C -0.182 4.182 16 C 0.074 3.926 17 O -0.315 6.315 18 C -0.198 4.198 19 C -0.085 4.085 20 C -0.146 4.146 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.038 0.962 24 H 0.210 0.790 25 H 0.167 0.833 26 H 0.268 0.732 27 H 0.159 0.841 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.215 -9.463 -1.846 17.176 hybrid contribution 0.096 0.665 0.123 0.683 sum 14.311 -8.797 -1.723 16.887 Atomic orbital electron populations 1.70083 1.08432 1.28089 1.52986 1.26011 0.95570 1.03425 0.94204 0.85628 0.79644 0.77996 0.79205 1.19392 1.21005 1.16406 1.21247 0.91345 0.92540 1.49906 0.96104 1.17936 0.93383 0.89831 0.96989 1.20697 1.06289 0.97835 0.91987 1.21877 1.02533 0.84415 0.99680 1.41566 1.58961 1.13749 1.04553 0.72929 1.18153 1.02633 0.95420 0.84716 1.20286 1.07955 0.98404 0.91542 1.17927 0.99497 0.87208 0.87948 1.84774 1.36848 1.48329 1.61526 1.20987 1.05491 0.92675 1.00652 1.20321 0.97375 0.99277 0.91519 1.19534 1.05924 0.94986 0.94138 0.92554 0.94570 0.96194 0.78968 0.83267 0.73167 0.84062 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.06 13.96 21.45 0.30 -60.76 15 2 C 0.00 0.24 5.47 84.65 0.46 0.70 15 3 Si 0.95 44.35 27.47 68.60 1.88 46.23 15 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 15 6 H -0.24 -10.20 6.54 99.48 0.65 -9.55 15 7 C -0.51 -30.40 9.65 25.60 0.25 -30.16 15 8 H 0.02 1.40 7.98 -2.91 -0.02 1.37 15 9 C 0.06 2.74 4.57 29.10 0.13 2.88 15 10 C -0.16 -6.96 5.51 -18.62 -0.10 -7.07 15 11 C 0.04 1.35 11.74 82.96 0.97 2.33 15 12 N -0.58 -16.66 6.08 -187.56 -1.14 -17.80 15 13 H 0.43 8.34 8.96 -92.71 -0.83 7.51 15 14 C 0.10 3.33 7.27 39.02 0.28 3.61 15 15 C -0.16 -4.53 10.01 22.47 0.22 -4.30 15 16 C 0.12 3.41 6.69 22.51 0.15 3.56 15 17 O -0.50 -11.27 13.49 -92.90 -1.25 -12.52 15 18 C -0.18 -5.64 9.91 22.13 0.22 -5.43 15 19 C -0.07 -2.55 10.04 22.22 0.22 -2.32 15 20 C -0.14 -5.74 6.35 -20.17 -0.13 -5.87 15 21 H 0.27 15.78 8.31 -92.71 -0.77 15.01 15 22 H 0.04 1.65 7.20 -2.39 -0.02 1.63 15 23 H 0.02 0.95 7.57 -2.39 -0.02 0.94 15 24 H 0.19 5.34 8.06 -2.91 -0.02 5.31 15 25 H 0.15 3.22 8.06 -2.91 -0.02 3.20 15 26 H 0.41 4.59 9.06 -74.06 -0.67 3.92 15 27 H 0.14 3.79 8.06 -2.91 -0.02 3.77 15 28 H 0.11 4.55 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -75.07 250.27 2.12 -72.95 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -0.36 Total: 13.98 kcal Atomic # 6 Polarization: -44.76 SS G_CDS: 2.69 Total: -42.08 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -0.84 Total: -78.57 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -1.25 Total: -12.52 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -75.07 2.12 -72.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133269.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.174 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds