Wall clock time and date at job start Mon Mar 30 2020 02:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.46888 * 2 1 4 4 C 1.38251 * 120.00296 * 90.00115 * 3 2 1 5 5 C 1.38216 * 120.00268 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99739 * 0.02562 * 5 4 3 7 7 C 1.38220 * 119.99893 * 0.24928 * 6 5 4 8 8 C 1.50698 * 119.99830 * 179.72414 * 7 6 5 9 9 C 1.50705 * 115.55208 * 234.39858 * 8 7 6 10 10 H 1.07994 * 120.00067 * 263.17765 * 9 8 7 11 11 C 1.37874 * 119.99958 * 83.17742 * 9 8 7 12 12 N 1.31515 * 120.00013 * 353.10456 * 11 9 8 13 13 Si 1.86794 * 120.00123 * 173.10797 * 11 9 8 14 14 H 1.48503 * 109.47100 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47016 * 119.99819 * 13 11 9 16 16 H 1.48502 * 109.47446 * 239.99651 * 13 11 9 17 17 C 1.53004 * 117.49858 * 88.73045 * 8 7 6 18 18 C 1.53003 * 117.49964 * 20.07345 * 8 7 6 19 19 C 1.38215 * 119.99631 * 270.01631 * 3 2 1 20 20 H 1.08994 * 109.46850 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47050 * 300.00349 * 1 2 3 22 22 H 1.09000 * 109.46732 * 60.00299 * 1 2 3 23 23 H 1.08993 * 109.47578 * 239.99521 * 2 1 3 24 24 H 1.09000 * 109.47030 * 119.99242 * 2 1 3 25 25 H 1.07996 * 120.00424 * 359.97438 * 4 3 2 26 26 H 1.07995 * 120.00623 * 179.97438 * 5 4 3 27 27 H 1.08002 * 120.00428 * 179.97438 * 6 5 4 28 28 H 0.96996 * 120.00040 * 174.98373 * 12 11 9 29 29 H 1.08999 * 117.49753 * 0.02562 * 17 8 7 30 30 H 1.09004 * 117.49696 * 145.02105 * 17 8 7 31 31 H 1.09006 * 117.49345 * 214.97718 * 18 8 7 32 32 H 1.08998 * 117.49732 * 359.97258 * 18 8 7 33 33 H 1.07996 * 119.99803 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2628 2.0726 1.1973 5 6 2.7240 3.3756 1.1972 6 6 2.9543 4.0273 -0.0001 7 6 2.7185 3.3776 -1.1971 8 6 2.9637 4.0900 -2.5022 9 6 1.7969 4.1202 -3.4555 10 1 1.7300 3.3920 -4.2502 11 6 0.8148 5.0773 -3.3130 12 7 0.8226 5.8771 -2.2691 13 14 -0.5269 5.2380 -4.6027 14 1 -0.3118 4.2274 -5.6693 15 1 -1.8514 5.0145 -3.9695 16 1 -0.4845 6.5995 -5.1942 17 6 4.3666 3.9964 -3.1055 18 6 3.8886 5.3086 -2.4789 19 6 2.2623 2.0725 -1.1970 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8935 -0.5139 -0.8899 24 1 1.8934 -0.5137 0.8901 25 1 2.0825 1.5638 2.1326 26 1 2.9036 3.8849 2.1325 27 1 3.3143 5.0456 -0.0002 28 1 0.1758 6.5971 -2.2049 29 1 5.1121 3.4190 -2.5586 30 1 4.4456 3.9569 -4.1919 31 1 3.6533 6.1319 -3.1535 32 1 4.3194 5.5952 -1.5196 33 1 2.0817 1.5635 -2.1322 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:10 Heat of formation + Delta-G solvation = 17.761783 kcal Electronic energy + Delta-G solvation = -14210.021181 eV Core-core repulsion = 12007.038581 eV Total energy + Delta-G solvation = -2202.982600 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.39152 -37.86304 -34.64863 -33.96769 -31.33908 -29.92717 -27.66944 -24.72505 -23.86655 -23.01548 -21.98104 -20.34162 -18.25151 -17.30947 -16.56849 -16.06314 -15.81332 -15.34244 -14.78815 -14.40914 -14.24449 -13.81423 -13.65099 -13.14816 -12.93599 -12.76240 -12.59242 -12.49251 -12.21800 -11.98966 -11.81533 -11.51762 -11.28286 -11.01265 -10.45970 -10.15504 -9.40248 -9.08013 -8.10407 -6.23578 0.72779 0.80155 1.37663 1.40569 1.50765 2.41114 3.06540 3.19214 3.56078 4.01160 4.09498 4.27994 4.40901 4.48431 4.57892 4.60221 4.63920 4.70486 4.86040 4.93468 4.94666 5.04021 5.10722 5.21354 5.33524 5.40631 5.46529 5.55090 5.61610 5.71402 5.83698 5.97836 6.14103 6.43326 6.44198 6.81807 7.44363 8.96591 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.011117 C = 0.009141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.797504 B = 2518.004772 C = 3062.243082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.093 4.093 4 C -0.145 4.145 5 C -0.126 4.126 6 C -0.140 4.140 7 C -0.016 4.016 8 C 0.044 3.956 9 C -0.506 4.506 10 H 0.052 0.948 11 C 0.030 3.970 12 N -0.897 5.897 13 Si 0.945 3.055 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.279 1.279 17 C -0.181 4.181 18 C -0.162 4.162 19 C -0.128 4.128 20 H 0.078 0.922 21 H 0.053 0.947 22 H 0.034 0.966 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.143 0.857 26 H 0.136 0.864 27 H 0.102 0.898 28 H 0.258 0.742 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -8.191 5.578 10.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.093 4.093 4 C -0.162 4.162 5 C -0.143 4.143 6 C -0.159 4.159 7 C -0.017 4.017 8 C 0.043 3.957 9 C -0.544 4.544 10 H 0.070 0.930 11 C -0.172 4.172 12 N -0.534 5.534 13 Si 0.771 3.229 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.204 1.204 17 C -0.219 4.219 18 C -0.199 4.199 19 C -0.147 4.147 20 H 0.097 0.903 21 H 0.072 0.928 22 H 0.053 0.947 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.160 0.840 26 H 0.154 0.846 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.759 -8.082 5.688 10.038 hybrid contribution -0.775 0.852 -0.896 1.459 sum 0.984 -7.230 4.792 8.730 Atomic orbital electron populations 1.21723 0.94760 1.02291 1.01283 1.20522 0.96155 0.91222 1.03416 1.20152 0.99025 0.97479 0.92634 1.21104 1.02276 0.95020 0.97840 1.21290 0.99977 0.95552 0.97517 1.21062 1.02662 0.99312 0.92826 1.19727 0.94356 0.93203 0.94378 1.17828 0.89147 0.96605 0.92074 1.20654 1.05878 1.15355 1.12507 0.92955 1.25627 0.98981 0.95988 0.96577 1.70156 1.37104 1.18093 1.28009 0.85711 0.79308 0.78115 0.79792 1.19079 1.21036 1.20428 1.23018 0.98385 1.01081 0.99366 1.22507 1.05613 0.91686 1.00142 1.20825 1.01481 0.94788 0.97556 0.90287 0.92820 0.94672 0.91103 0.89129 0.83959 0.84640 0.87963 0.93281 0.89625 0.89843 0.92024 0.90581 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.90 71.98 0.71 -2.99 16 2 C -0.08 -2.04 6.06 29.85 0.18 -1.86 16 3 C -0.09 -3.30 5.13 -19.87 -0.10 -3.40 16 4 C -0.14 -4.80 9.70 22.27 0.22 -4.58 16 5 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 6 C -0.14 -6.19 9.30 22.27 0.21 -5.98 16 7 C -0.02 -0.77 5.24 -19.87 -0.10 -0.87 16 8 C 0.04 2.21 1.58 -53.67 -0.08 2.13 16 9 C -0.51 -28.05 8.55 25.60 0.22 -27.83 16 10 H 0.05 2.90 7.82 -2.91 -0.02 2.87 16 11 C 0.03 1.64 5.40 84.65 0.46 2.09 16 12 N -0.90 -51.83 13.03 21.45 0.28 -51.55 16 13 Si 0.94 43.86 29.55 68.60 2.03 45.89 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 C -0.18 -7.98 9.94 30.62 0.30 -7.68 16 18 C -0.16 -7.75 9.12 30.62 0.28 -7.47 16 19 C -0.13 -5.56 9.11 22.27 0.20 -5.35 16 20 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 24 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 25 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 26 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 27 H 0.10 4.62 6.42 -2.91 -0.02 4.60 16 28 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 29 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 30 H 0.08 3.55 8.14 -2.38 -0.02 3.53 16 31 H 0.06 3.13 8.14 -2.38 -0.02 3.11 16 32 H 0.08 3.42 6.57 -2.39 -0.02 3.41 16 33 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -61.27 281.30 6.08 -55.18 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 1.07 Total: 18.63 kcal Atomic # 6 Polarization: -70.86 SS G_CDS: 2.71 Total: -68.14 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.28 Total: -51.55 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -61.27 6.08 -55.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.943 kcal (2) G-P(sol) polarization free energy of solvation -61.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds