Wall clock time and date at job start Mon Mar 30 2020 02:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48505 * 109.46891 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47092 * 299.99656 * 3 2 1 6 6 H 1.48498 * 109.47077 * 59.99945 * 3 2 1 7 7 C 1.37881 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00553 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47129 * 179.97438 * 10 9 7 12 12 C 1.37722 * 120.13780 * 265.00091 * 11 10 9 13 13 C 1.38677 * 120.42462 * 179.97438 * 12 11 10 14 14 C 1.37947 * 120.47212 * 359.97438 * 13 12 11 15 15 C 1.38635 * 119.87628 * 359.97438 * 14 13 12 16 16 O 1.35115 * 133.94843 * 179.68445 * 15 14 13 17 17 C 1.34242 * 108.15887 * 179.89709 * 16 15 14 18 18 N 1.29906 * 110.29268 * 0.40624 * 17 16 15 19 19 C 1.36054 * 108.80434 * 359.75061 * 18 17 16 20 20 H 0.96998 * 120.00706 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.46984 * 59.99761 * 9 7 2 22 22 H 1.09001 * 109.47273 * 299.99887 * 9 7 2 23 23 H 1.09005 * 109.47004 * 60.00236 * 10 9 7 24 24 H 1.08992 * 109.47614 * 300.00339 * 10 9 7 25 25 H 1.08000 * 119.78718 * 359.97438 * 12 11 10 26 26 H 1.07999 * 119.76558 * 180.02562 * 13 12 11 27 27 H 1.08005 * 120.06166 * 179.97438 * 14 13 12 28 28 H 1.07993 * 124.84953 * 180.15403 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 6 1.2364 -5.6176 1.1880 13 6 0.5431 -6.8186 1.1955 14 6 0.0996 -7.3778 0.0150 15 6 0.3470 -6.7362 -1.1888 16 8 0.0585 -7.0182 -2.4783 17 6 0.5458 -6.0278 -3.2423 18 7 1.1357 -5.1372 -2.5032 19 6 1.0478 -5.5203 -1.2006 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8720 -3.6043 0.8906 24 1 2.8720 -3.6044 -0.8893 25 1 1.5782 -5.1895 2.1187 26 1 0.3483 -7.3194 2.1323 27 1 -0.4394 -8.3136 0.0286 28 1 0.4631 -5.9806 -4.3180 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260202721.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:07 Heat of formation + Delta-G solvation = -0.643615 kcal Electronic energy + Delta-G solvation = -13685.260163 eV Core-core repulsion = 11280.220439 eV Total energy + Delta-G solvation = -2405.039723 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.13232 -39.28069 -36.05809 -35.50177 -33.80435 -30.91161 -30.35991 -26.97680 -24.68960 -23.93278 -23.39746 -21.40398 -19.00095 -18.62316 -18.01031 -17.59866 -16.82112 -16.52541 -15.59782 -14.94991 -14.72486 -14.33595 -14.26225 -13.68189 -13.24805 -13.00659 -12.81652 -12.56301 -12.46654 -12.31353 -11.79807 -11.66128 -11.45513 -11.08772 -10.58821 -9.71173 -9.26955 -8.21467 -6.34043 -0.19059 0.27701 1.38447 1.39753 1.53461 1.57634 1.71513 2.39682 2.69366 3.11082 3.20291 3.54286 3.99234 4.16008 4.26952 4.31723 4.49387 4.59079 4.79627 4.97411 5.07382 5.11497 5.29465 5.37919 5.44159 5.47594 5.76283 5.78555 5.82359 6.20098 6.69238 6.81975 7.35217 8.90803 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.041390 B = 0.007132 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.336487 B = 3925.066250 C = 4293.084814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.046 3.954 10 C -0.061 4.061 11 C -0.040 4.040 12 C -0.132 4.132 13 C -0.076 4.076 14 C -0.106 4.106 15 C -0.009 4.009 16 O -0.222 6.222 17 C 0.235 3.765 18 N -0.527 5.527 19 C -0.013 4.013 20 H 0.264 0.736 21 H -0.021 1.021 22 H -0.008 1.008 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.150 0.850 26 H 0.184 0.816 27 H 0.168 0.832 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -15.721 -0.976 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.009 3.991 10 C -0.098 4.098 11 C -0.041 4.041 12 C -0.151 4.151 13 C -0.093 4.093 14 C -0.125 4.125 15 C -0.059 4.059 16 O -0.113 6.113 17 C 0.004 3.996 18 N -0.255 5.255 19 C -0.123 4.123 20 H 0.073 0.927 21 H -0.003 1.003 22 H 0.010 0.990 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.167 0.833 26 H 0.201 0.799 27 H 0.185 0.815 28 H 0.320 0.680 Dipole moment (debyes) X Y Z Total from point charges 0.752 -15.069 -1.171 15.134 hybrid contribution -0.163 0.689 -0.212 0.739 sum 0.589 -14.380 -1.383 14.458 Atomic orbital electron populations 1.70127 1.07992 1.27777 1.51667 1.26031 0.95775 1.03530 0.94494 0.85327 0.79057 0.78329 0.77889 1.18426 1.20437 1.19916 1.21696 0.93562 0.92116 1.50674 0.92017 1.18800 0.93770 0.92318 0.94224 1.20475 0.97374 0.90668 1.01307 1.19679 0.97499 0.96053 0.90903 1.21310 1.00502 0.96340 0.96907 1.21468 0.95038 0.94222 0.98622 1.20284 1.03606 1.02030 0.86562 1.20755 1.02414 0.97341 0.85433 1.84493 1.65749 1.45654 1.15451 1.29370 0.89637 0.79976 1.00605 1.70590 1.22927 1.29560 1.02406 1.19977 1.04204 0.95887 0.92270 0.92728 1.00282 0.98958 0.90690 0.93196 0.83261 0.79898 0.81487 0.68003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.44 13.29 21.45 0.28 -59.15 15 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 15 3 Si 0.97 45.78 29.54 68.60 2.03 47.81 15 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 15 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 15 7 C -0.54 -32.68 9.11 25.60 0.23 -32.45 15 8 H 0.06 3.55 7.74 -2.91 -0.02 3.53 15 9 C 0.05 2.64 4.96 29.85 0.15 2.79 15 10 C -0.06 -2.83 5.30 29.85 0.16 -2.68 15 11 C -0.04 -1.64 5.16 -19.67 -0.10 -1.74 15 12 C -0.13 -4.13 9.66 22.25 0.21 -3.92 15 13 C -0.08 -1.79 10.03 22.31 0.22 -1.57 15 14 C -0.11 -2.67 10.06 22.30 0.22 -2.44 15 15 C -0.01 -0.30 7.43 22.88 0.17 -0.13 15 16 O -0.22 -6.40 10.77 -10.07 -0.11 -6.51 15 17 C 0.23 6.42 13.13 130.53 1.71 8.13 15 18 N -0.53 -20.77 11.34 -308.42 -3.50 -24.26 15 19 C -0.01 -0.53 6.94 39.32 0.27 -0.26 15 20 H 0.26 15.59 8.31 -92.71 -0.77 14.82 15 21 H -0.02 -1.38 8.14 -2.38 -0.02 -1.40 15 22 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 15 23 H 0.07 3.18 8.05 -2.38 -0.02 3.16 15 24 H 0.05 2.42 8.12 -2.39 -0.02 2.40 15 25 H 0.15 4.10 8.06 -2.91 -0.02 4.08 15 26 H 0.18 2.55 8.06 -2.91 -0.02 2.53 15 27 H 0.17 2.85 8.06 -2.91 -0.02 2.83 15 28 H 0.31 4.03 8.06 -2.91 -0.02 4.00 15 Total: -1.00 -78.89 254.21 3.58 -75.31 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: 1.16 Total: 0.66 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 3.72 Total: -33.85 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -3.21 Total: -83.42 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.11 Total: -6.51 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -78.89 3.58 -75.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260202721.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.668 kcal (2) G-P(sol) polarization free energy of solvation -78.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds