Wall clock time and date at job start Mon Mar 30 2020 02:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47190 * 240.00743 * 3 2 1 5 5 H 1.48507 * 109.46905 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46987 * 120.00375 * 3 2 1 7 7 C 1.37867 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00281 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47265 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47262 * 180.02562 * 10 9 7 12 12 C 1.36658 * 120.10677 * 265.02330 * 11 10 9 13 13 C 1.38742 * 120.51186 * 179.65829 * 12 11 10 14 14 C 1.37838 * 120.60504 * 0.62298 * 13 12 11 15 15 C 1.38938 * 119.79346 * 359.39792 * 14 13 12 16 16 O 1.34819 * 133.46386 * 180.28012 * 15 14 13 17 17 N 1.41360 * 109.33339 * 180.02562 * 16 15 14 18 18 C 1.29736 * 109.74923 * 359.97438 * 17 16 15 19 19 C 1.39644 * 120.10288 * 84.99500 * 11 10 9 20 20 H 0.96999 * 119.99931 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46794 * 59.99978 * 9 7 2 22 22 H 1.09004 * 109.47025 * 300.00269 * 9 7 2 23 23 H 1.08997 * 109.47515 * 60.00073 * 10 9 7 24 24 H 1.09004 * 109.47036 * 299.99916 * 10 9 7 25 25 H 1.08001 * 119.74374 * 359.97438 * 12 11 10 26 26 H 1.08005 * 119.69855 * 180.30177 * 13 12 11 27 27 H 1.08002 * 120.10783 * 179.68152 * 14 13 12 28 28 H 1.08002 * 126.29005 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9671 -0.0012 12 6 1.2377 -5.6124 1.1763 13 6 0.5387 -6.8108 1.1861 14 6 0.1002 -7.3772 0.0084 15 6 0.3486 -6.7375 -1.1996 16 8 0.0514 -7.0293 -2.4819 17 7 0.5560 -6.0111 -3.3226 18 6 1.1502 -5.1063 -2.6074 19 6 1.0510 -5.5207 -1.2050 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8721 -3.6043 0.8894 24 1 2.8721 -3.6042 -0.8906 25 1 1.5791 -5.1836 2.1069 26 1 0.3408 -7.3072 2.1247 27 1 -0.4387 -8.3129 0.0250 28 1 1.6302 -4.2125 -2.9775 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260282840.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:29 Heat of formation + Delta-G solvation = 45.913219 kcal Electronic energy + Delta-G solvation = -13652.080041 eV Core-core repulsion = 11249.059173 eV Total energy + Delta-G solvation = -2403.020868 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.47270 -37.82021 -34.40841 -33.22470 -31.88803 -29.81978 -28.91374 -25.20752 -22.98858 -22.43461 -21.74467 -20.11122 -17.22328 -16.87080 -16.27471 -15.65099 -15.30152 -14.54564 -13.87419 -13.73286 -13.25136 -12.66663 -12.57598 -12.00378 -11.92931 -11.39815 -11.28722 -11.13172 -10.94997 -10.77184 -10.59542 -9.98391 -9.69572 -9.22139 -8.64676 -8.42821 -8.14322 -6.07518 -4.11900 0.86567 1.53977 2.32808 2.79044 3.28584 3.33935 3.35473 3.84081 4.39155 4.46698 4.65918 4.84407 5.09290 5.28248 5.36305 5.50347 5.63138 5.94673 6.05678 6.07762 6.31402 6.45553 6.50139 6.73169 6.81896 6.96415 7.44798 7.56059 7.66202 7.90139 8.29149 8.94600 9.53102 11.03261 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.040620 B = 0.007124 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.156956 B = 3929.182407 C = 4307.642976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.087 4.087 11 C 0.028 3.972 12 C -0.161 4.161 13 C -0.054 4.054 14 C -0.150 4.150 15 C 0.083 3.917 16 O -0.107 6.107 17 N -0.303 5.303 18 C 0.127 3.873 19 C -0.201 4.201 20 H 0.262 0.738 21 H 0.018 0.982 22 H 0.019 0.981 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -11.314 1.133 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.124 4.124 11 C 0.025 3.975 12 C -0.179 4.179 13 C -0.073 4.073 14 C -0.170 4.170 15 C 0.029 3.971 16 O -0.115 6.115 17 N -0.047 5.047 18 C -0.074 4.074 19 C -0.205 4.205 20 H 0.072 0.928 21 H 0.036 0.964 22 H 0.038 0.962 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.151 0.849 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.842 -11.699 -0.093 11.843 hybrid contribution 0.561 1.326 0.706 1.603 sum 2.403 -10.373 0.613 10.665 Atomic orbital electron populations 1.69957 1.06096 1.26916 1.50174 1.25015 0.94827 0.99292 0.95111 0.86643 0.79574 0.83026 0.78676 1.20169 1.21268 1.20177 1.21165 0.93033 0.90754 1.51486 0.92493 1.19074 0.93502 0.90222 0.97773 1.20984 0.98621 0.90726 1.02102 1.19782 0.92357 0.95084 0.90239 1.20753 1.02795 0.96246 0.98101 1.21084 0.94449 0.94781 0.97022 1.19858 1.07070 1.02116 0.87965 1.20297 0.95332 0.94505 0.86922 1.89079 1.68303 1.41153 1.12977 1.79812 1.14297 0.98525 1.12060 1.26157 0.92822 0.97542 0.90837 1.20711 1.08625 0.97200 0.93936 0.92798 0.96372 0.96229 0.91321 0.91689 0.84909 0.84753 0.85052 0.77229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 15 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.53 -14.11 9.11 -34.44 -0.31 -14.43 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 15 9 C 0.03 0.76 4.96 -27.88 -0.14 0.63 15 10 C -0.09 -1.65 5.19 -27.89 -0.14 -1.80 15 11 C 0.03 0.48 5.13 -104.67 -0.54 -0.06 15 12 C -0.16 -2.40 9.60 -39.97 -0.38 -2.78 15 13 C -0.05 -0.69 10.02 -39.54 -0.40 -1.08 15 14 C -0.15 -2.07 10.07 -39.47 -0.40 -2.47 15 15 C 0.08 1.40 7.48 -38.47 -0.29 1.11 15 16 O -0.11 -1.91 12.06 7.68 0.09 -1.82 15 17 N -0.30 -5.36 12.81 31.94 0.41 -4.95 15 18 C 0.13 2.10 12.09 -15.08 -0.18 1.92 15 19 C -0.20 -3.51 6.13 -105.16 -0.64 -4.15 15 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.07 1.24 8.05 -51.93 -0.42 0.82 15 24 H 0.06 1.17 8.03 -51.93 -0.42 0.75 15 25 H 0.13 1.77 8.05 -52.49 -0.42 1.35 15 26 H 0.13 1.23 8.06 -52.48 -0.42 0.80 15 27 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 28 H 0.21 2.91 8.06 -52.49 -0.42 2.48 15 LS Contribution 254.89 15.07 3.84 3.84 Total: -1.00 -30.47 254.89 -6.38 -36.84 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -2.91 Total: -2.84 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.52 Total: -21.57 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 1.15 Total: -30.38 kcal Atomic # 8 Polarization: -1.91 SS G_CDS: 0.09 Total: -1.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.47 -6.38 -36.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260282840.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.756 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds