Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47190 * 240.00743 * 3 2 1 5 5 H 1.48507 * 109.46905 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46987 * 120.00375 * 3 2 1 7 7 C 1.37867 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00281 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47265 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47262 * 180.02562 * 10 9 7 12 12 C 1.36658 * 120.10677 * 265.02330 * 11 10 9 13 13 C 1.38742 * 120.51186 * 179.65829 * 12 11 10 14 14 C 1.37838 * 120.60504 * 0.62298 * 13 12 11 15 15 C 1.38938 * 119.79346 * 359.39792 * 14 13 12 16 16 O 1.34819 * 133.46386 * 180.28012 * 15 14 13 17 17 N 1.41360 * 109.33339 * 180.02562 * 16 15 14 18 18 C 1.29736 * 109.74923 * 359.97438 * 17 16 15 19 19 C 1.39644 * 120.10288 * 84.99500 * 11 10 9 20 20 H 0.96999 * 119.99931 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46794 * 59.99978 * 9 7 2 22 22 H 1.09004 * 109.47025 * 300.00269 * 9 7 2 23 23 H 1.08997 * 109.47515 * 60.00073 * 10 9 7 24 24 H 1.09004 * 109.47036 * 299.99916 * 10 9 7 25 25 H 1.08001 * 119.74374 * 359.97438 * 12 11 10 26 26 H 1.08005 * 119.69855 * 180.30177 * 13 12 11 27 27 H 1.08002 * 120.10783 * 179.68152 * 14 13 12 28 28 H 1.08002 * 126.29005 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9671 -0.0012 12 6 1.2377 -5.6124 1.1763 13 6 0.5387 -6.8108 1.1861 14 6 0.1002 -7.3772 0.0084 15 6 0.3486 -6.7375 -1.1996 16 8 0.0514 -7.0293 -2.4819 17 7 0.5560 -6.0111 -3.3226 18 6 1.1502 -5.1063 -2.6074 19 6 1.0510 -5.5207 -1.2050 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8721 -3.6043 0.8894 24 1 2.8721 -3.6042 -0.8906 25 1 1.5791 -5.1836 2.1069 26 1 0.3408 -7.3072 2.1247 27 1 -0.4387 -8.3129 0.0250 28 1 1.6302 -4.2125 -2.9775 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260282840.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = 28.437961 kcal Electronic energy + Delta-G solvation = -13652.837825 eV Core-core repulsion = 11249.059173 eV Total energy + Delta-G solvation = -2403.778652 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.73090 -39.06547 -36.01067 -34.79399 -33.54752 -31.02484 -30.51105 -26.97046 -24.33238 -23.69009 -23.34787 -21.55480 -18.61968 -18.39082 -17.88410 -16.97038 -16.50747 -16.46074 -15.18929 -15.06150 -14.70206 -14.24828 -14.21423 -13.57100 -13.15651 -12.98867 -12.80632 -12.57270 -12.54120 -12.33136 -12.07162 -11.72433 -11.52570 -11.17118 -10.53747 -9.86127 -9.40751 -8.18119 -6.29817 -0.35242 0.32443 1.08741 1.43460 1.45316 1.53180 1.54406 2.42359 2.65508 3.15875 3.25530 3.40648 3.63826 4.03315 4.16832 4.33021 4.46772 4.63240 4.80177 4.83849 4.87588 5.13154 5.18042 5.34048 5.46173 5.51926 5.72510 5.77931 5.85255 6.18914 6.23154 6.87416 7.40245 8.93003 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.040620 B = 0.007124 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.156956 B = 3929.182407 C = 4307.642976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.038 3.962 10 C -0.072 4.072 11 C 0.002 3.998 12 C -0.161 4.161 13 C -0.040 4.040 14 C -0.143 4.143 15 C 0.062 3.938 16 O -0.121 6.121 17 N -0.322 5.322 18 C 0.125 3.875 19 C -0.222 4.222 20 H 0.262 0.738 21 H -0.010 1.010 22 H -0.008 1.008 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.149 0.851 26 H 0.182 0.818 27 H 0.164 0.836 28 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 -12.026 2.385 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.001 3.999 10 C -0.109 4.109 11 C 0.000 4.000 12 C -0.179 4.179 13 C -0.059 4.059 14 C -0.162 4.162 15 C 0.008 3.992 16 O -0.129 6.129 17 N -0.067 5.067 18 C -0.075 4.075 19 C -0.225 4.225 20 H 0.071 0.929 21 H 0.008 0.992 22 H 0.010 0.990 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.167 0.833 26 H 0.199 0.801 27 H 0.181 0.819 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.743 -12.428 1.163 12.780 hybrid contribution 0.254 1.470 0.381 1.540 sum 2.997 -10.958 1.544 11.465 Atomic orbital electron populations 1.70103 1.07898 1.27771 1.51670 1.25938 0.95610 1.03264 0.94772 0.85544 0.78245 0.78244 0.79286 1.19117 1.21387 1.19009 1.21660 0.93765 0.91893 1.50504 0.91490 1.18894 0.93885 0.92072 0.95033 1.20697 0.97500 0.89804 1.02947 1.19689 0.94030 0.95031 0.91272 1.21114 1.02157 0.96850 0.97774 1.21584 0.92248 0.93569 0.98496 1.20410 1.06005 1.02868 0.86947 1.20787 0.96095 0.94951 0.87343 1.89025 1.68770 1.41412 1.13676 1.79758 1.15208 0.99038 1.12661 1.26499 0.92338 0.97743 0.90931 1.20909 1.09461 0.97974 0.94204 0.92890 0.99151 0.98964 0.90237 0.91045 0.83307 0.80115 0.81864 0.75603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.44 0.28 -55.52 15 2 C 0.00 0.11 5.46 84.65 0.46 0.58 15 3 Si 0.96 42.77 29.54 68.60 2.03 44.80 15 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 15 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 7 C -0.54 -29.05 9.11 25.60 0.23 -28.82 15 8 H 0.07 3.38 7.74 -2.91 -0.02 3.36 15 9 C 0.04 1.91 4.96 29.85 0.15 2.05 15 10 C -0.07 -2.72 5.19 29.85 0.15 -2.56 15 11 C 0.00 0.06 5.13 -19.90 -0.10 -0.04 15 12 C -0.16 -4.42 9.60 22.02 0.21 -4.20 15 13 C -0.04 -0.87 10.02 22.30 0.22 -0.65 15 14 C -0.14 -3.52 10.07 22.34 0.23 -3.29 15 15 C 0.06 2.01 7.48 22.99 0.17 2.19 15 16 O -0.12 -4.32 12.06 29.87 0.36 -3.96 15 17 N -0.32 -11.56 12.81 -52.86 -0.68 -12.23 15 18 C 0.12 4.20 12.09 87.18 1.05 5.25 15 19 C -0.22 -7.70 6.13 -20.21 -0.12 -7.82 15 20 H 0.26 14.86 8.31 -92.71 -0.77 14.09 15 21 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 15 22 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 15 23 H 0.08 2.77 8.05 -2.39 -0.02 2.75 15 24 H 0.07 2.54 8.03 -2.39 -0.02 2.52 15 25 H 0.15 3.55 8.05 -2.91 -0.02 3.52 15 26 H 0.18 2.25 8.06 -2.91 -0.02 2.23 15 27 H 0.16 2.92 8.06 -2.91 -0.02 2.90 15 28 H 0.23 6.44 8.06 -2.91 -0.02 6.41 15 Total: -1.00 -66.50 254.89 5.81 -60.69 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.16 Total: 3.54 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 2.66 Total: -37.31 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -0.39 Total: -67.76 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: 0.36 Total: -3.96 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -66.50 5.81 -60.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260282840.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.125 kcal (2) G-P(sol) polarization free energy of solvation -66.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds