Wall clock time and date at job start Mon Mar 30 2020 02:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46835 * 2 1 4 4 C 1.50703 * 109.46812 * 120.00054 * 2 1 3 5 5 C 1.38648 * 119.87546 * 60.00461 * 4 2 1 6 6 C 1.38619 * 120.50117 * 180.02562 * 5 4 2 7 7 C 1.37637 * 120.24547 * 359.97438 * 6 5 4 8 8 C 1.40692 * 119.74499 * 359.97438 * 7 6 5 9 9 C 1.41399 * 120.24448 * 179.72701 * 8 7 6 10 10 H 1.07994 * 120.00639 * 155.57305 * 9 8 7 11 11 C 1.39951 * 119.99751 * 335.57322 * 9 8 7 12 12 N 1.30822 * 120.00144 * 341.94704 * 11 9 8 13 13 Si 1.86800 * 119.99943 * 161.94711 * 11 9 8 14 14 H 1.48494 * 109.47354 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46942 * 120.00283 * 13 11 9 16 16 H 1.48500 * 109.46755 * 239.99670 * 13 11 9 17 17 C 1.37598 * 119.87274 * 240.02110 * 4 2 1 18 18 C 1.53000 * 109.47202 * 240.00074 * 2 1 3 19 19 C 1.53004 * 117.49634 * 128.74721 * 18 2 1 20 20 C 1.52997 * 117.49736 * 60.08734 * 18 2 1 21 21 H 1.09005 * 109.47291 * 299.99993 * 1 2 3 22 22 H 1.09001 * 109.47162 * 59.99771 * 1 2 3 23 23 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.75064 * 359.97438 * 5 4 2 25 25 H 1.08001 * 119.87521 * 180.02562 * 6 5 4 26 26 H 1.07999 * 120.12391 * 180.02562 * 7 6 5 27 27 H 0.97001 * 120.00679 * 179.97438 * 12 11 9 28 28 H 1.08000 * 120.12897 * 0.02562 * 17 4 2 29 29 H 1.08998 * 115.55265 * 274.41965 * 18 2 1 30 30 H 1.09000 * 117.49765 * 359.97438 * 19 18 2 31 31 H 1.09000 * 117.49672 * 145.02458 * 19 18 2 32 32 H 1.09002 * 117.50185 * 214.98104 * 20 18 2 33 33 H 1.09003 * 117.50170 * 359.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6958 -2.0379 1.4473 6 6 2.1502 -2.7038 2.5749 7 6 2.9424 -2.0522 3.4927 8 6 3.2910 -0.7055 3.2825 9 6 4.0996 -0.0242 4.2214 10 1 4.6855 0.8283 3.9115 11 6 4.1405 -0.4548 5.5524 12 7 3.1980 -1.2341 6.0170 13 14 5.5409 0.0831 6.6654 14 1 6.4704 0.9564 5.9047 15 1 4.9924 0.8343 7.8230 16 1 6.2727 -1.1133 7.1536 17 6 2.8228 -0.0391 2.1348 18 6 2.0400 -0.7212 -1.2492 19 6 3.0764 0.0041 -2.1100 20 6 1.6375 -0.1483 -2.6096 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.0743 -2.5568 0.7326 25 1 1.8823 -3.7380 2.7335 26 1 3.2957 -2.5731 4.3704 27 1 3.2265 -1.5329 6.9394 28 1 3.0832 0.9951 1.9643 29 1 2.1253 -1.8046 -1.1648 30 1 3.3945 0.9952 -1.7866 31 1 3.8432 -0.6022 -2.5922 32 1 1.4582 -0.8546 -3.4202 33 1 1.0089 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260283628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:59 Heat of formation + Delta-G solvation = 20.894866 kcal Electronic energy + Delta-G solvation = -13889.441313 eV Core-core repulsion = 11686.594574 eV Total energy + Delta-G solvation = -2202.846739 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.44576 -36.70136 -33.81271 -31.96579 -29.76417 -28.06815 -25.17726 -23.82532 -22.01999 -21.05708 -20.47175 -19.01196 -16.94182 -15.51932 -15.09313 -14.63334 -14.28638 -13.64546 -13.31819 -12.73177 -12.48221 -12.18684 -11.96512 -11.49848 -11.39531 -11.14946 -10.94852 -10.85194 -10.76640 -10.40167 -10.17496 -10.06533 -9.67728 -9.32388 -9.24806 -9.08287 -7.40171 -7.17284 -6.71111 -4.30273 2.82015 3.05174 3.09874 3.15364 3.25801 3.96950 4.13288 4.65492 5.01677 5.24694 5.25499 5.56266 5.75687 5.80767 5.83764 6.00096 6.08096 6.15313 6.30682 6.35125 6.40327 6.51508 6.58256 6.63212 6.80985 6.99866 7.11978 7.31809 7.46518 7.66688 7.98608 8.11011 8.17962 8.35686 8.70146 8.95472 9.04297 10.24152 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.045579 B = 0.007030 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.168940 B = 3981.964658 C = 4246.287899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.017 4.017 3 H 0.065 0.935 4 C -0.053 4.053 5 C -0.232 4.232 6 C -0.107 4.107 7 C -0.166 4.166 8 C 0.109 3.891 9 C -0.466 4.466 10 H 0.076 0.924 11 C 0.076 3.924 12 N -0.796 5.796 13 Si 0.905 3.095 14 H -0.261 1.261 15 H -0.275 1.275 16 H -0.272 1.272 17 C -0.217 4.217 18 C -0.128 4.128 19 C -0.182 4.182 20 C -0.189 4.189 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.115 0.885 27 H 0.279 0.721 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 0.988 -8.207 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.035 4.035 3 H 0.083 0.917 4 C -0.053 4.053 5 C -0.251 4.251 6 C -0.125 4.125 7 C -0.186 4.186 8 C 0.107 3.893 9 C -0.496 4.496 10 H 0.094 0.906 11 C -0.141 4.141 12 N -0.422 5.422 13 Si 0.729 3.271 14 H -0.184 1.184 15 H -0.201 1.201 16 H -0.198 1.198 17 C -0.237 4.237 18 C -0.147 4.147 19 C -0.219 4.219 20 C -0.226 4.226 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.133 0.867 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.620 0.886 -7.982 8.193 hybrid contribution 0.589 0.149 0.651 0.890 sum -1.032 1.035 -7.332 7.476 Atomic orbital electron populations 1.21755 0.95143 1.01733 1.00544 1.19634 0.94872 0.97628 0.91367 0.91704 1.19123 0.98040 0.93952 0.94233 1.20129 1.09597 0.95158 1.00210 1.20663 0.99148 0.97599 0.95129 1.21294 1.02684 0.94902 0.99706 1.17586 0.89453 0.91335 0.90908 1.19577 1.23873 1.13205 0.92914 0.90576 1.25884 0.95586 0.93642 0.98947 1.69843 1.28719 1.27440 1.16192 0.86320 0.81706 0.79349 0.79677 1.18449 1.20070 1.19756 1.20852 1.05654 0.98144 0.99003 1.22411 1.02231 0.99443 0.90573 1.22965 0.92126 1.02146 1.04640 1.22938 0.98288 1.03256 0.98111 0.92766 0.93593 0.92627 0.89701 0.89661 0.86693 0.91063 0.89281 0.87802 0.89050 0.89363 0.89475 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.85 37.16 0.33 -1.82 16 2 C -0.02 -0.30 2.71 -91.77 -0.25 -0.54 16 3 H 0.06 1.15 7.62 -51.93 -0.40 0.76 16 4 C -0.05 -1.19 4.77 -104.70 -0.50 -1.68 16 5 C -0.23 -5.20 8.51 -39.29 -0.33 -5.53 16 6 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16 7 C -0.17 -4.43 8.69 -38.88 -0.34 -4.77 16 8 C 0.11 2.98 5.57 -106.83 -0.60 2.38 16 9 C -0.47 -12.63 9.05 -37.74 -0.34 -12.97 16 10 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 11 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 12 N -0.80 -21.03 10.97 55.55 0.61 -20.42 16 13 Si 0.90 18.98 29.60 -169.99 -5.03 13.95 16 14 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 15 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 17 C -0.22 -5.40 9.41 -38.87 -0.37 -5.77 16 18 C -0.13 -2.03 5.03 -90.62 -0.46 -2.49 16 19 C -0.18 -2.56 10.18 -26.69 -0.27 -2.83 16 20 C -0.19 -2.44 9.74 -26.69 -0.26 -2.70 16 21 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.05 0.62 7.29 -51.93 -0.38 0.24 16 23 H 0.05 0.89 7.38 -51.93 -0.38 0.50 16 24 H 0.08 1.71 7.35 -52.49 -0.39 1.33 16 25 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.12 3.16 6.18 -52.49 -0.32 2.83 16 27 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 28 H 0.09 2.12 7.94 -52.49 -0.42 1.70 16 29 H 0.10 1.73 7.38 -51.93 -0.38 1.35 16 30 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.10 7.61 -51.93 -0.40 0.70 16 LS Contribution 275.05 15.07 4.14 4.14 Total: -1.00 -27.41 275.05 -8.87 -36.27 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.72 Total: 5.88 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: -3.87 Total: -39.83 kcal Atomic # 7 Polarization: -21.03 SS G_CDS: 0.61 Total: -20.42 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.41 -8.87 -36.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.167 kcal (2) G-P(sol) polarization free energy of solvation -27.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds