Wall clock time and date at job start Mon Mar 30 2020 02:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46835 * 2 1 4 4 C 1.50703 * 109.46812 * 120.00054 * 2 1 3 5 5 C 1.38648 * 119.87546 * 60.00461 * 4 2 1 6 6 C 1.38619 * 120.50117 * 180.02562 * 5 4 2 7 7 C 1.37637 * 120.24547 * 359.97438 * 6 5 4 8 8 C 1.40692 * 119.74499 * 359.97438 * 7 6 5 9 9 C 1.41399 * 120.24448 * 179.72701 * 8 7 6 10 10 H 1.07994 * 120.00639 * 155.57305 * 9 8 7 11 11 C 1.39951 * 119.99751 * 335.57322 * 9 8 7 12 12 N 1.30822 * 120.00144 * 341.94704 * 11 9 8 13 13 Si 1.86800 * 119.99943 * 161.94711 * 11 9 8 14 14 H 1.48494 * 109.47354 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46942 * 120.00283 * 13 11 9 16 16 H 1.48500 * 109.46755 * 239.99670 * 13 11 9 17 17 C 1.37598 * 119.87274 * 240.02110 * 4 2 1 18 18 C 1.53000 * 109.47202 * 240.00074 * 2 1 3 19 19 C 1.53004 * 117.49634 * 128.74721 * 18 2 1 20 20 C 1.52997 * 117.49736 * 60.08734 * 18 2 1 21 21 H 1.09005 * 109.47291 * 299.99993 * 1 2 3 22 22 H 1.09001 * 109.47162 * 59.99771 * 1 2 3 23 23 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.75064 * 359.97438 * 5 4 2 25 25 H 1.08001 * 119.87521 * 180.02562 * 6 5 4 26 26 H 1.07999 * 120.12391 * 180.02562 * 7 6 5 27 27 H 0.97001 * 120.00679 * 179.97438 * 12 11 9 28 28 H 1.08000 * 120.12897 * 0.02562 * 17 4 2 29 29 H 1.08998 * 115.55265 * 274.41965 * 18 2 1 30 30 H 1.09000 * 117.49765 * 359.97438 * 19 18 2 31 31 H 1.09000 * 117.49672 * 145.02458 * 19 18 2 32 32 H 1.09002 * 117.50185 * 214.98104 * 20 18 2 33 33 H 1.09003 * 117.50170 * 359.97438 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6958 -2.0379 1.4473 6 6 2.1502 -2.7038 2.5749 7 6 2.9424 -2.0522 3.4927 8 6 3.2910 -0.7055 3.2825 9 6 4.0996 -0.0242 4.2214 10 1 4.6855 0.8283 3.9115 11 6 4.1405 -0.4548 5.5524 12 7 3.1980 -1.2341 6.0170 13 14 5.5409 0.0831 6.6654 14 1 6.4704 0.9564 5.9047 15 1 4.9924 0.8343 7.8230 16 1 6.2727 -1.1133 7.1536 17 6 2.8228 -0.0391 2.1348 18 6 2.0400 -0.7212 -1.2492 19 6 3.0764 0.0041 -2.1100 20 6 1.6375 -0.1483 -2.6096 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.0743 -2.5568 0.7326 25 1 1.8823 -3.7380 2.7335 26 1 3.2957 -2.5731 4.3704 27 1 3.2265 -1.5329 6.9394 28 1 3.0832 0.9951 1.9643 29 1 2.1253 -1.8046 -1.1648 30 1 3.3945 0.9952 -1.7866 31 1 3.8432 -0.6022 -2.5922 32 1 1.4582 -0.8546 -3.4202 33 1 1.0089 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260283628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:59 Heat of formation + Delta-G solvation = 8.711595 kcal Electronic energy + Delta-G solvation = -13889.969619 eV Core-core repulsion = 11686.594574 eV Total energy + Delta-G solvation = -2203.375045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03417 -38.22323 -35.64116 -33.52596 -31.71115 -29.75635 -27.13589 -25.20781 -23.10495 -22.76614 -22.27827 -20.53872 -18.76598 -17.30380 -16.66161 -16.26871 -15.76915 -15.23201 -14.93775 -14.42133 -13.97279 -13.87139 -13.47026 -13.17193 -12.89519 -12.77120 -12.52694 -12.46258 -12.20541 -12.10166 -11.70068 -11.47648 -11.21215 -11.04368 -10.91390 -10.65996 -9.36208 -9.06660 -8.63303 -6.33931 0.99824 1.13347 1.36699 1.50773 1.52838 2.20677 2.73082 3.02290 3.71101 3.81337 4.05522 4.15518 4.30928 4.42504 4.61778 4.68224 4.71577 4.80441 4.83856 4.99803 5.06037 5.07074 5.15582 5.17132 5.32475 5.34401 5.40524 5.46746 5.61014 5.75209 6.07083 6.13568 6.24726 6.43048 6.72800 6.95964 7.07139 8.34568 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.045579 B = 0.007030 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.168940 B = 3981.964658 C = 4246.287899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.015 4.015 3 H 0.062 0.938 4 C -0.046 4.046 5 C -0.228 4.228 6 C -0.111 4.111 7 C -0.197 4.197 8 C 0.078 3.922 9 C -0.505 4.505 10 H 0.071 0.929 11 C 0.035 3.965 12 N -0.829 5.829 13 Si 0.982 3.018 14 H -0.259 1.259 15 H -0.265 1.265 16 H -0.263 1.263 17 C -0.239 4.239 18 C -0.152 4.152 19 C -0.188 4.188 20 C -0.159 4.159 21 H 0.041 0.959 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.114 0.886 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.287 0.713 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 1.167 -9.707 9.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.033 4.033 3 H 0.081 0.919 4 C -0.046 4.046 5 C -0.247 4.247 6 C -0.129 4.129 7 C -0.216 4.216 8 C 0.076 3.924 9 C -0.535 4.535 10 H 0.090 0.910 11 C -0.179 4.179 12 N -0.455 5.455 13 Si 0.802 3.198 14 H -0.183 1.183 15 H -0.189 1.189 16 H -0.188 1.188 17 C -0.259 4.259 18 C -0.170 4.170 19 C -0.225 4.225 20 C -0.196 4.196 21 H 0.060 0.940 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.132 0.868 25 H 0.126 0.874 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.069 1.060 -9.498 9.779 hybrid contribution 0.646 0.071 1.011 1.201 sum -1.424 1.131 -8.488 8.680 Atomic orbital electron populations 1.21726 0.93409 1.02114 1.01487 1.19636 0.96227 0.97128 0.90303 0.91940 1.19597 0.95996 0.94054 0.94994 1.20478 1.08967 0.95302 0.99914 1.20979 0.98211 0.98756 0.94993 1.21243 1.04898 0.95128 1.00357 1.17963 0.90295 0.92017 0.92083 1.19821 1.25268 1.14112 0.94267 0.91032 1.26758 0.97843 0.93403 0.99940 1.69895 1.30241 1.28300 1.17068 0.85176 0.77999 0.79148 0.77460 1.18268 1.18925 1.18793 1.21045 1.06902 0.98481 0.99463 1.22244 1.04816 0.98833 0.91101 1.23067 0.93217 1.01899 1.04299 1.23033 0.97031 1.03414 0.96141 0.94001 0.90532 0.92489 0.86761 0.87416 0.88499 0.90232 0.89290 0.88678 0.89317 0.88479 0.87451 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.85 71.98 0.64 -3.18 16 2 C -0.01 -0.49 2.71 -11.54 -0.03 -0.53 16 3 H 0.06 2.14 7.62 -2.39 -0.02 2.12 16 4 C -0.05 -2.04 4.77 -19.92 -0.10 -2.14 16 5 C -0.23 -9.98 8.51 22.46 0.19 -9.79 16 6 C -0.11 -5.35 10.02 22.22 0.22 -5.13 16 7 C -0.20 -10.85 8.69 22.73 0.20 -10.65 16 8 C 0.08 4.45 5.57 -21.29 -0.12 4.33 16 9 C -0.50 -28.54 9.05 23.46 0.21 -28.32 16 10 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 11 C 0.03 1.83 5.13 85.26 0.44 2.26 16 12 N -0.83 -45.06 10.97 21.83 0.24 -44.82 16 13 Si 0.98 39.54 29.60 68.60 2.03 41.57 16 14 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 15 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 17 C -0.24 -12.26 9.41 22.73 0.21 -12.04 16 18 C -0.15 -4.43 5.03 -10.79 -0.05 -4.48 16 19 C -0.19 -4.82 10.18 30.62 0.31 -4.51 16 20 C -0.16 -3.48 9.74 30.62 0.30 -3.19 16 21 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 22 H 0.08 1.78 7.29 -2.39 -0.02 1.76 16 23 H 0.06 1.65 7.38 -2.39 -0.02 1.63 16 24 H 0.11 4.32 7.35 -2.91 -0.02 4.30 16 25 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 26 H 0.10 5.59 6.18 -2.91 -0.02 5.57 16 27 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 28 H 0.09 4.40 7.94 -2.91 -0.02 4.38 16 29 H 0.10 2.95 7.38 -2.39 -0.02 2.93 16 30 H 0.09 2.31 8.05 -2.39 -0.02 2.29 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.10 2.02 7.61 -2.39 -0.02 2.00 16 Total: -1.00 -60.58 275.05 5.77 -54.81 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 1.08 Total: 25.80 kcal Atomic # 6 Polarization: -79.79 SS G_CDS: 2.42 Total: -77.36 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.24 Total: -44.82 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -60.58 5.77 -54.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.526 kcal (2) G-P(sol) polarization free energy of solvation -60.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds