Wall clock time and date at job start Mon Mar 30 2020 02:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00376 * 2 1 4 4 H 1.48503 * 109.47245 * 274.89217 * 3 2 1 5 5 H 1.48500 * 109.47064 * 34.89152 * 3 2 1 6 6 H 1.48500 * 109.47541 * 154.89177 * 3 2 1 7 7 C 1.37882 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00178 * 186.64867 * 7 2 1 9 9 C 1.50701 * 120.00058 * 6.64818 * 7 2 1 10 10 H 1.09001 * 109.57743 * 305.17003 * 9 7 2 11 11 C 1.53561 * 109.58187 * 184.90130 * 9 7 2 12 12 C 1.51592 * 107.78813 * 297.30833 * 11 9 7 13 13 O 1.21310 * 121.23615 * 137.32245 * 12 11 9 14 14 C 1.47039 * 117.52647 * 317.33512 * 12 11 9 15 15 C 1.39712 * 120.83861 * 194.29548 * 14 12 11 16 16 C 1.37772 * 119.60904 * 180.15014 * 15 14 12 17 17 C 1.38705 * 120.36791 * 0.02562 * 16 15 14 18 18 C 1.37990 * 120.67229 * 0.24125 * 17 16 15 19 19 C 1.38890 * 119.92440 * 359.44068 * 18 17 16 20 20 N 1.38701 * 120.52204 * 180.44634 * 19 18 17 21 21 H 0.97005 * 119.99774 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.79116 * 177.73279 * 11 9 7 23 23 H 1.09002 * 109.84082 * 56.90587 * 11 9 7 24 24 H 1.07997 * 120.19456 * 0.12222 * 15 14 12 25 25 H 1.08003 * 119.81870 * 179.97438 * 16 15 14 26 26 H 1.08004 * 119.66028 * 179.97438 * 17 16 15 27 27 H 1.07997 * 120.03834 * 179.69973 * 18 17 16 28 28 H 0.97006 * 120.05596 * 19.03703 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3934 2.1060 -1.3950 5 1 1.5022 2.6205 0.8009 6 1 3.5946 1.4124 0.5941 7 6 2.0045 -1.1941 -0.0005 8 1 3.0790 -1.1974 0.1078 9 6 1.2586 -2.4948 -0.1522 10 1 0.4830 -2.5621 0.6108 11 6 2.2356 -3.6694 0.0019 12 6 3.2507 -3.5777 -1.1202 13 8 4.4313 -3.7696 -0.9177 14 6 2.7513 -3.2471 -2.4631 15 6 3.5545 -3.4312 -3.5913 16 6 3.0619 -3.1102 -4.8373 17 6 1.7770 -2.6063 -4.9749 18 6 0.9742 -2.4140 -3.8692 19 6 1.4480 -2.7371 -2.6042 20 7 0.6483 -2.5575 -1.4853 21 1 -0.4850 0.8401 -0.0004 22 1 1.6930 -4.6122 -0.0672 23 1 2.7426 -3.6050 0.9646 24 1 4.5557 -3.8225 -3.4873 25 1 3.6801 -3.2507 -5.7117 26 1 1.4026 -2.3580 -5.9570 27 1 -0.0230 -2.0165 -3.9876 28 1 -0.3131 -2.4740 -1.5836 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260337646.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:55 Heat of formation + Delta-G solvation = -17.738167 kcal Electronic energy + Delta-G solvation = -14363.253515 eV Core-core repulsion = 11957.472516 eV Total energy + Delta-G solvation = -2405.780999 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.57475 -37.27909 -35.67624 -32.47489 -30.94982 -29.82361 -28.24209 -25.60538 -22.78355 -22.14270 -21.04780 -18.44705 -16.86086 -16.50227 -15.86076 -15.01295 -14.70885 -13.96018 -13.83599 -13.29253 -13.26057 -13.00238 -12.67447 -11.91580 -11.68979 -11.38008 -11.14645 -10.96340 -10.72674 -10.60878 -10.03999 -9.78610 -9.05976 -8.83636 -8.55381 -8.32362 -6.60610 -6.23331 -4.38595 1.54372 2.31155 3.19731 3.25275 3.27986 3.33620 4.26892 4.39353 4.65739 5.03033 5.20653 5.49829 5.53441 5.87511 5.92943 6.04273 6.13436 6.21260 6.30469 6.58879 6.74824 6.85085 7.03775 7.09140 7.19084 7.49973 7.65451 7.93762 8.28251 8.41688 8.71419 8.79409 9.33423 10.76233 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.012510 C = 0.011103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.055371 B = 2237.743175 C = 2521.280050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.082 3.918 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.268 3.732 10 H 0.067 0.933 11 C -0.172 4.172 12 C 0.425 3.575 13 O -0.493 6.493 14 C -0.254 4.254 15 C -0.018 4.018 16 C -0.222 4.222 17 C -0.048 4.048 18 C -0.223 4.223 19 C 0.298 3.702 20 N -0.701 5.701 21 H 0.265 0.735 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -4.787 -5.592 7.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.123 4.123 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.167 3.833 10 H 0.085 0.915 11 C -0.211 4.211 12 C 0.307 3.693 13 O -0.372 6.372 14 C -0.261 4.261 15 C -0.037 4.037 16 C -0.243 4.243 17 C -0.067 4.067 18 C -0.246 4.246 19 C 0.183 3.817 20 N -0.321 5.321 21 H 0.075 0.925 22 H 0.097 0.903 23 H 0.108 0.892 24 H 0.137 0.863 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.038 -4.757 -5.184 7.036 hybrid contribution -0.077 1.257 -0.188 1.273 sum -0.115 -3.501 -5.372 6.413 Atomic orbital electron populations 1.69891 1.06086 1.27402 1.48079 1.24955 0.94803 0.99495 0.93095 0.86552 0.80277 0.82825 0.78362 1.20357 1.20968 1.19476 1.21445 0.94069 0.90709 1.51354 0.92062 1.18878 0.91980 0.91257 0.81136 0.91499 1.22700 0.98912 1.00760 0.98693 1.22266 0.88462 0.69505 0.89062 1.90413 1.19553 1.41160 1.86032 1.19837 0.96458 1.14491 0.95267 1.20958 0.97617 0.93615 0.91525 1.20594 0.97016 1.09898 0.96743 1.20910 0.93582 0.94753 0.97436 1.20624 1.01819 1.10436 0.91703 1.17944 0.89488 0.86559 0.87696 1.45778 1.07870 1.73336 1.05104 0.92515 0.90315 0.89201 0.86342 0.87082 0.87010 0.86507 0.77439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.11 13.16 55.43 0.73 -22.38 15 2 C 0.08 2.16 5.39 -17.82 -0.10 2.06 15 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.54 -14.04 7.87 -34.44 -0.27 -14.32 15 8 H 0.06 1.69 7.42 -52.49 -0.39 1.30 15 9 C 0.27 6.10 3.02 -68.66 -0.21 5.89 15 10 H 0.07 1.55 8.12 -51.93 -0.42 1.13 15 11 C -0.17 -3.52 5.85 -27.15 -0.16 -3.68 15 12 C 0.43 9.49 5.99 -30.30 -0.18 9.31 15 13 O -0.49 -11.83 17.40 5.53 0.10 -11.73 15 14 C -0.25 -5.41 5.79 -104.87 -0.61 -6.01 15 15 C -0.02 -0.35 9.64 -39.20 -0.38 -0.73 15 16 C -0.22 -3.70 10.03 -39.58 -0.40 -4.10 15 17 C -0.05 -0.78 10.02 -39.50 -0.40 -1.17 15 18 C -0.22 -4.08 9.93 -39.43 -0.39 -4.47 15 19 C 0.30 6.16 6.29 -83.60 -0.53 5.64 15 20 N -0.70 -14.78 5.16 -52.64 -0.27 -15.05 15 21 H 0.27 6.72 8.31 -40.82 -0.34 6.39 15 22 H 0.08 1.40 8.14 -51.93 -0.42 0.97 15 23 H 0.09 1.80 8.14 -51.93 -0.42 1.38 15 24 H 0.12 2.13 7.82 -52.49 -0.41 1.72 15 25 H 0.11 1.54 8.06 -52.48 -0.42 1.11 15 26 H 0.11 1.47 8.06 -52.48 -0.42 1.04 15 27 H 0.12 1.95 8.06 -52.49 -0.42 1.53 15 28 H 0.39 7.77 8.89 -40.82 -0.36 7.40 15 LS Contribution 247.41 15.07 3.73 3.73 Total: -1.00 -28.22 247.41 -7.18 -35.40 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -2.83 Total: 5.60 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -3.61 Total: -11.58 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.46 Total: -37.42 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.10 Total: -11.73 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.22 -7.18 -35.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337646.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.663 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds