Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.88126 * 2 1 4 4 C 1.54349 * 110.82342 * 123.51689 * 2 1 3 5 5 C 1.51366 * 105.16830 * 144.57597 * 4 2 1 6 6 C 1.38491 * 130.39162 * 162.83988 * 5 4 2 7 7 C 1.38104 * 120.21585 * 179.71528 * 6 5 4 8 8 C 1.38251 * 119.93777 * 0.52391 * 7 6 5 9 9 C 1.50702 * 120.03653 * 179.72014 * 8 7 6 10 10 C 1.50696 * 109.47168 * 269.73090 * 9 8 7 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47364 * 359.97438 * 14 12 10 16 16 H 1.48508 * 109.46883 * 120.00040 * 14 12 10 17 17 H 1.48497 * 109.46870 * 239.99850 * 14 12 10 18 18 C 1.38109 * 119.92993 * 359.45753 * 8 7 6 19 19 C 1.38218 * 109.76150 * 342.80511 * 5 4 2 20 20 C 1.51374 * 109.75610 * 0.02562 * 19 5 4 21 21 H 1.09007 * 109.46833 * 183.50872 * 1 2 3 22 22 H 1.08995 * 109.47004 * 303.51141 * 1 2 3 23 23 H 1.08998 * 109.47237 * 63.51661 * 1 2 3 24 24 H 1.08997 * 110.30048 * 263.49335 * 4 2 1 25 25 H 1.08997 * 110.30251 * 25.55175 * 4 2 1 26 26 H 1.07999 * 119.89082 * 359.96678 * 6 5 4 27 27 H 1.08011 * 120.03451 * 180.27046 * 7 6 5 28 28 H 1.09000 * 109.46490 * 149.73208 * 9 8 7 29 29 H 1.08999 * 109.46382 * 29.73424 * 9 8 7 30 30 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 31 31 H 1.08001 * 119.89132 * 180.27136 * 18 8 7 32 32 H 1.09001 * 110.30311 * 136.10949 * 20 19 5 33 33 H 1.08995 * 110.30176 * 258.25748 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0787 -0.7966 1.2028 5 6 3.3322 -1.4733 0.6910 6 6 4.3890 -2.0445 1.3803 7 6 5.4393 -2.6181 0.6910 8 6 5.4421 -2.6131 -0.6915 9 6 6.5902 -3.2328 -1.4458 10 6 7.6478 -2.1891 -1.6971 11 1 7.5029 -1.1781 -1.3461 12 6 8.8000 -2.5248 -2.3760 13 7 8.9734 -3.7545 -2.8090 14 14 10.1107 -1.2309 -2.6882 15 1 9.6740 0.0655 -2.1105 16 1 11.3844 -1.6531 -2.0519 17 1 10.3153 -1.0766 -4.1509 18 6 4.3890 -2.0444 -1.3806 19 6 3.3322 -1.4734 -0.6912 20 6 2.0788 -0.7961 -1.2028 21 1 -0.3633 -1.0258 0.0629 22 1 -0.3633 0.5674 0.8568 23 1 -0.3633 0.4583 -0.9198 24 1 2.3214 -0.1223 2.0240 25 1 1.3511 -1.5405 1.5274 26 1 4.3897 -2.0449 2.4602 27 1 6.2599 -3.0666 1.2316 28 1 6.2308 -3.6226 -2.3981 29 1 7.0147 -4.0460 -0.8571 30 1 8.2927 -4.4263 -2.6472 31 1 4.3897 -2.0447 -2.4606 32 1 2.3217 -0.1217 -2.0241 33 1 1.3518 -1.5408 -1.5264 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260403527.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = -8.904859 kcal Electronic energy + Delta-G solvation = -13747.995287 eV Core-core repulsion = 11543.856335 eV Total energy + Delta-G solvation = -2204.138952 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.73467 -36.33413 -33.45908 -31.15835 -30.73222 -28.06997 -26.57151 -25.05423 -22.73436 -21.37393 -20.09890 -19.50812 -16.76088 -15.73171 -15.39762 -14.54222 -14.21608 -13.71524 -13.21831 -13.20118 -13.04088 -12.67739 -12.39089 -12.06578 -11.62287 -11.40845 -11.11458 -10.99356 -10.68660 -10.61911 -10.58216 -10.18288 -10.13208 -9.82296 -8.87169 -8.36512 -8.13595 -7.60631 -6.37506 -4.08594 1.99549 2.05852 3.43949 3.47544 3.62025 4.35585 4.56266 4.60014 4.78821 4.90333 5.32652 5.37613 5.40629 5.49425 5.53079 5.66595 5.80635 5.84406 5.89377 5.93430 6.01237 6.06663 6.25030 6.30895 6.37352 6.63794 6.73137 7.05357 7.10799 7.17965 7.19943 7.68617 7.69929 8.14119 8.45174 8.84757 9.62357 11.01340 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.047385 B = 0.006299 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.763427 B = 4443.926574 C = 4593.711820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.078 0.922 4 C -0.069 4.069 5 C -0.131 4.131 6 C -0.108 4.108 7 C -0.125 4.125 8 C -0.028 4.028 9 C 0.036 3.964 10 C -0.591 4.591 11 H 0.051 0.949 12 C 0.016 3.984 13 N -0.913 5.913 14 Si 1.075 2.925 15 H -0.289 1.289 16 H -0.286 1.286 17 H -0.286 1.286 18 C -0.111 4.111 19 C -0.101 4.101 20 C -0.075 4.075 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.269 0.731 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 5.775 6.106 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.107 4.107 5 C -0.131 4.131 6 C -0.126 4.126 7 C -0.143 4.143 8 C -0.028 4.028 9 C -0.001 4.001 10 C -0.629 4.629 11 H 0.069 0.931 12 C -0.188 4.188 13 N -0.549 5.549 14 Si 0.904 3.096 15 H -0.215 1.215 16 H -0.213 1.213 17 H -0.213 1.213 18 C -0.130 4.130 19 C -0.101 4.101 20 C -0.112 4.112 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.127 0.873 27 H 0.136 0.864 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.088 0.912 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.767 6.026 5.414 15.120 hybrid contribution -1.364 -0.272 0.717 1.564 sum -14.131 5.754 6.131 16.443 Atomic orbital electron populations 1.21781 0.94612 1.01831 1.01589 1.21851 0.95314 0.99223 0.94912 0.90381 1.21002 0.94235 0.97931 0.97486 1.20304 0.96349 1.02125 0.94347 1.20482 0.93877 0.99508 0.98781 1.20947 0.97947 1.01113 0.94269 1.20328 0.94572 0.94264 0.93618 1.18467 0.91102 0.96229 0.94322 1.21961 1.03864 0.96750 1.40333 0.93059 1.25887 0.99181 1.00130 0.93557 1.70725 1.37407 1.02643 1.44162 0.83454 0.75282 0.74320 0.76581 1.21481 1.21254 1.21262 1.20515 0.93184 0.99696 0.99560 1.20446 0.95720 0.99644 0.94299 1.21061 0.94256 0.98164 0.97677 0.92540 0.92649 0.92545 0.91572 0.90993 0.87291 0.86404 0.96321 0.96260 0.92021 0.86850 0.91194 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.12 37.16 0.34 -0.95 16 2 C -0.09 -1.11 3.67 -89.22 -0.33 -1.44 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.07 -0.90 6.32 -26.85 -0.17 -1.07 16 5 C -0.13 -2.22 6.14 -104.21 -0.64 -2.86 16 6 C -0.11 -1.93 10.04 -39.54 -0.40 -2.33 16 7 C -0.12 -2.57 9.70 -39.63 -0.38 -2.95 16 8 C -0.03 -0.64 5.07 -104.66 -0.53 -1.17 16 9 C 0.04 0.94 4.42 -29.04 -0.13 0.81 16 10 C -0.59 -17.14 9.09 -34.44 -0.31 -17.45 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 13 N -0.91 -28.03 13.65 55.43 0.76 -27.28 16 14 Si 1.08 25.73 29.90 -169.99 -5.08 20.65 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 C -0.11 -2.32 9.70 -39.53 -0.38 -2.71 16 19 C -0.10 -1.81 6.14 -104.20 -0.64 -2.45 16 20 C -0.07 -1.03 6.32 -26.86 -0.17 -1.20 16 21 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.85 7.83 -51.93 -0.41 0.44 16 26 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 28 H 0.02 0.51 7.95 -51.93 -0.41 0.09 16 29 H 0.02 0.52 7.96 -51.93 -0.41 0.11 16 30 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 31 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 LS Contribution 275.59 15.07 4.15 4.15 Total: -1.00 -30.96 275.59 -8.95 -39.91 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.94 Total: -2.04 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: -3.84 Total: -35.40 kcal Atomic # 7 Polarization: -28.03 SS G_CDS: 0.76 Total: -27.28 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.96 -8.95 -39.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403527.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.005 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds