Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.88126 * 2 1 4 4 C 1.54349 * 110.82342 * 123.51689 * 2 1 3 5 5 C 1.51366 * 105.16830 * 144.57597 * 4 2 1 6 6 C 1.38491 * 130.39162 * 162.83988 * 5 4 2 7 7 C 1.38104 * 120.21585 * 179.71528 * 6 5 4 8 8 C 1.38251 * 119.93777 * 0.52391 * 7 6 5 9 9 C 1.50702 * 120.03653 * 179.72014 * 8 7 6 10 10 C 1.50696 * 109.47168 * 269.73090 * 9 8 7 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47364 * 359.97438 * 14 12 10 16 16 H 1.48508 * 109.46883 * 120.00040 * 14 12 10 17 17 H 1.48497 * 109.46870 * 239.99850 * 14 12 10 18 18 C 1.38109 * 119.92993 * 359.45753 * 8 7 6 19 19 C 1.38218 * 109.76150 * 342.80511 * 5 4 2 20 20 C 1.51374 * 109.75610 * 0.02562 * 19 5 4 21 21 H 1.09007 * 109.46833 * 183.50872 * 1 2 3 22 22 H 1.08995 * 109.47004 * 303.51141 * 1 2 3 23 23 H 1.08998 * 109.47237 * 63.51661 * 1 2 3 24 24 H 1.08997 * 110.30048 * 263.49335 * 4 2 1 25 25 H 1.08997 * 110.30251 * 25.55175 * 4 2 1 26 26 H 1.07999 * 119.89082 * 359.96678 * 6 5 4 27 27 H 1.08011 * 120.03451 * 180.27046 * 7 6 5 28 28 H 1.09000 * 109.46490 * 149.73208 * 9 8 7 29 29 H 1.08999 * 109.46382 * 29.73424 * 9 8 7 30 30 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 31 31 H 1.08001 * 119.89132 * 180.27136 * 18 8 7 32 32 H 1.09001 * 110.30311 * 136.10949 * 20 19 5 33 33 H 1.08995 * 110.30176 * 258.25748 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0787 -0.7966 1.2028 5 6 3.3322 -1.4733 0.6910 6 6 4.3890 -2.0445 1.3803 7 6 5.4393 -2.6181 0.6910 8 6 5.4421 -2.6131 -0.6915 9 6 6.5902 -3.2328 -1.4458 10 6 7.6478 -2.1891 -1.6971 11 1 7.5029 -1.1781 -1.3461 12 6 8.8000 -2.5248 -2.3760 13 7 8.9734 -3.7545 -2.8090 14 14 10.1107 -1.2309 -2.6882 15 1 9.6740 0.0655 -2.1105 16 1 11.3844 -1.6531 -2.0519 17 1 10.3153 -1.0766 -4.1509 18 6 4.3890 -2.0444 -1.3806 19 6 3.3322 -1.4734 -0.6912 20 6 2.0788 -0.7961 -1.2028 21 1 -0.3633 -1.0258 0.0629 22 1 -0.3633 0.5674 0.8568 23 1 -0.3633 0.4583 -0.9198 24 1 2.3214 -0.1223 2.0240 25 1 1.3511 -1.5405 1.5274 26 1 4.3897 -2.0449 2.4602 27 1 6.2599 -3.0666 1.2316 28 1 6.2308 -3.6226 -2.3981 29 1 7.0147 -4.0460 -0.8571 30 1 8.2927 -4.4263 -2.6472 31 1 4.3897 -2.0447 -2.4606 32 1 2.3217 -0.1217 -2.0241 33 1 1.3518 -1.5408 -1.5264 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260403527.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = -24.767863 kcal Electronic energy + Delta-G solvation = -13748.683158 eV Core-core repulsion = 11543.856335 eV Total energy + Delta-G solvation = -2204.826824 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09187 -37.72572 -35.49293 -32.77896 -32.04684 -29.59404 -27.87386 -26.61280 -24.70687 -22.79098 -21.27339 -20.91195 -18.96003 -16.89472 -16.82482 -15.99162 -15.77268 -15.60484 -15.08380 -14.36667 -14.26166 -13.72661 -13.71216 -13.56079 -13.39760 -12.95706 -12.67589 -12.51019 -12.03708 -11.97735 -11.83809 -11.69163 -11.56369 -11.48285 -10.93925 -10.62245 -9.65828 -9.22956 -8.70282 -6.46657 0.48027 0.52000 1.48779 1.58584 1.76206 2.50901 2.86797 3.08657 3.46982 3.67729 4.02873 4.12357 4.14562 4.18571 4.38413 4.63466 4.64075 4.73746 4.79776 4.82396 4.86222 4.95527 4.98940 5.06465 5.11490 5.23015 5.30118 5.44489 5.48815 5.56468 5.71539 5.86370 5.93004 6.09712 6.16767 6.49773 7.33730 8.64527 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.047385 B = 0.006299 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.763427 B = 4443.926574 C = 4593.711820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.067 4.067 5 C -0.126 4.126 6 C -0.105 4.105 7 C -0.141 4.141 8 C -0.065 4.065 9 C 0.042 3.958 10 C -0.604 4.604 11 H 0.042 0.958 12 C -0.034 4.034 13 N -0.934 5.934 14 Si 1.124 2.876 15 H -0.274 1.274 16 H -0.273 1.273 17 H -0.274 1.274 18 C -0.131 4.131 19 C -0.106 4.106 20 C -0.076 4.076 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.144 0.856 27 H 0.113 0.887 28 H -0.003 1.003 29 H 0.000 1.000 30 H 0.256 0.744 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.153 7.873 7.457 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.104 4.104 5 C -0.126 4.126 6 C -0.122 4.122 7 C -0.159 4.159 8 C -0.065 4.065 9 C 0.006 3.994 10 C -0.642 4.642 11 H 0.061 0.939 12 C -0.232 4.232 13 N -0.571 5.571 14 Si 0.945 3.055 15 H -0.199 1.199 16 H -0.199 1.199 17 H -0.200 1.200 18 C -0.149 4.149 19 C -0.106 4.106 20 C -0.113 4.113 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.162 0.838 27 H 0.132 0.868 28 H 0.015 0.985 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.705 8.114 6.774 18.109 hybrid contribution -0.876 -0.940 0.335 1.328 sum -15.581 7.174 7.109 18.568 Atomic orbital electron populations 1.21753 0.92228 1.02512 1.02834 1.21876 0.97182 0.98698 0.92869 0.90040 1.21140 0.92283 0.98531 0.98421 1.20933 0.97245 1.00343 0.94047 1.20800 0.92857 0.98086 1.00486 1.21000 0.99294 1.02233 0.93386 1.20098 0.94643 0.97022 0.94714 1.18253 0.92282 0.95403 0.93512 1.22247 1.04897 0.96832 1.40238 0.93944 1.27499 1.01663 1.01269 0.92746 1.70855 1.37281 1.03338 1.45617 0.82848 0.73061 0.72272 0.77324 1.19922 1.19862 1.19968 1.20517 0.94207 1.00955 0.99244 1.20904 0.96001 0.98504 0.95162 1.21213 0.92540 0.98589 0.98933 0.92203 0.91049 0.91718 0.89627 0.88996 0.83849 0.86843 0.98492 0.98189 0.93447 0.87966 0.90850 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.12 71.98 0.66 -1.21 16 2 C -0.09 -1.71 3.67 -9.88 -0.04 -1.75 16 3 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.07 -1.43 6.32 30.52 0.19 -1.24 16 5 C -0.13 -3.94 6.14 -19.60 -0.12 -4.06 16 6 C -0.10 -3.54 10.04 22.30 0.22 -3.32 16 7 C -0.14 -5.93 9.70 22.24 0.22 -5.72 16 8 C -0.06 -3.11 5.07 -19.89 -0.10 -3.21 16 9 C 0.04 2.39 4.42 29.10 0.13 2.52 16 10 C -0.60 -36.52 9.09 25.60 0.23 -36.29 16 11 H 0.04 2.58 7.74 -2.91 -0.02 2.55 16 12 C -0.03 -2.06 5.46 84.66 0.46 -1.59 16 13 N -0.93 -59.24 13.65 21.45 0.29 -58.95 16 14 Si 1.12 51.99 29.90 68.60 2.05 54.04 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 C -0.13 -5.65 9.70 22.30 0.22 -5.43 16 19 C -0.11 -3.66 6.14 -19.59 -0.12 -3.78 16 20 C -0.08 -1.91 6.32 30.51 0.19 -1.71 16 21 H 0.06 0.80 8.06 -2.38 -0.02 0.78 16 22 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.09 1.69 7.83 -2.39 -0.02 1.67 16 26 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 27 H 0.11 4.70 8.06 -2.90 -0.02 4.68 16 28 H 0.00 -0.19 7.95 -2.39 -0.02 -0.20 16 29 H 0.00 -0.01 7.96 -2.39 -0.02 -0.03 16 30 H 0.26 16.48 7.22 -92.71 -0.67 15.81 16 31 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 2.00 7.89 -2.39 -0.02 1.98 16 Total: -1.00 -69.36 275.59 5.65 -63.70 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.17 Total: 7.99 kcal Atomic # 6 Polarization: -68.93 SS G_CDS: 2.14 Total: -66.78 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.29 Total: -58.95 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -69.36 5.65 -63.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403527.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.935 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds