Wall clock time and date at job start Mon Mar 30 2020 02:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48500 * 109.46879 * 240.00073 * 3 2 1 5 5 H 1.48503 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00016 * 3 2 1 7 7 C 1.40422 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.39945 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.39336 * 126.42887 * 179.97438 * 9 7 2 11 11 C 1.39779 * 107.57509 * 180.02562 * 10 9 7 12 12 Br 1.89097 * 125.70639 * 180.02562 * 11 10 9 13 13 N 1.30658 * 108.59094 * 0.02562 * 11 10 9 14 14 O 1.35129 * 126.43097 * 359.68627 * 9 7 2 15 15 H 0.96996 * 119.99612 * 0.02562 * 1 2 3 16 16 H 1.08004 * 126.21521 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0936 1.6963 -1.2125 5 1 1.2749 2.7465 0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0079 -1.2161 0.0005 8 1 3.0879 -1.2162 0.0001 9 6 1.3082 -2.4280 0.0005 10 6 1.8653 -3.7052 0.0005 11 6 0.8127 -4.6249 -0.0001 12 35 0.9919 -6.5073 0.0004 13 7 -0.3158 -3.9663 -0.0010 14 8 -0.0346 -2.5794 0.0060 15 1 -0.4849 0.8400 -0.0004 16 1 2.9191 -3.9416 0.0002 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260797291.mol2 16 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:29 Heat of formation + Delta-G solvation = 4.989312 kcal Electronic energy + Delta-G solvation = -7810.244773 eV Core-core repulsion = 5916.922587 eV Total energy + Delta-G solvation = -1893.322186 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 216.948 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -41.54402 -36.01434 -34.18416 -31.74448 -31.37197 -27.72133 -22.74763 -21.78504 -19.60055 -17.33167 -16.40322 -16.11797 -15.14529 -14.42726 -13.99918 -13.25959 -13.14688 -12.84926 -12.70527 -12.12614 -11.80613 -11.42182 -11.25679 -10.72326 -9.83516 -9.01065 -7.06180 0.16963 0.76809 1.38707 1.42911 1.57971 1.90280 2.11292 2.95708 2.97300 4.34093 4.83984 4.95594 5.02229 5.47894 5.89087 6.20779 6.30558 7.00072 7.98692 Molecular weight = 216.95amu Principal moments of inertia in cm(-1) A = 0.135686 B = 0.008426 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 206.309422 B = 3322.098308 C = 3518.564354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.018 3.982 3 Si 1.021 2.979 4 H -0.246 1.246 5 H -0.264 1.264 6 H -0.247 1.247 7 C -0.428 4.428 8 H 0.133 0.867 9 C 0.197 3.803 10 C -0.451 4.451 11 C 0.115 3.885 12 Br 0.039 6.961 13 N -0.449 5.449 14 O -0.106 6.106 15 H 0.307 0.693 16 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.094 -3.190 -0.002 6.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.204 4.204 3 Si 0.837 3.163 4 H -0.170 1.170 5 H -0.188 1.188 6 H -0.170 1.170 7 C -0.457 4.457 8 H 0.151 0.849 9 C 0.137 3.863 10 C -0.484 4.484 11 C -0.123 4.123 12 Br 0.120 6.880 13 N -0.211 5.211 14 O -0.111 6.111 15 H 0.118 0.882 16 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.554 -3.838 -0.002 5.230 hybrid contribution 0.723 0.695 -0.001 1.003 sum 4.277 -3.142 -0.003 5.307 Atomic orbital electron populations 1.69754 1.10138 1.33199 1.27762 1.27650 0.95869 1.06613 0.90296 0.84672 0.78277 0.72192 0.81208 1.16986 1.18782 1.16997 1.19773 0.96563 0.87627 1.41739 0.84914 1.20819 0.82473 0.95591 0.87398 1.21917 0.98965 0.88840 1.38635 1.24598 0.95275 0.93469 0.98944 1.96494 1.97790 0.95972 1.97750 1.80091 1.18753 0.85619 1.36631 1.89331 1.22122 1.19386 1.80230 0.88171 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.03 12.03 21.91 0.26 -39.77 13 2 C 0.02 0.85 5.50 85.41 0.47 1.32 13 3 Si 1.02 32.94 29.56 68.60 2.03 34.97 13 4 H -0.25 -7.50 7.11 99.48 0.71 -6.79 13 5 H -0.26 -8.09 7.11 99.48 0.71 -7.38 13 6 H -0.25 -7.50 7.11 99.48 0.71 -6.80 13 7 C -0.43 -21.53 9.35 23.22 0.22 -21.31 13 8 H 0.13 5.86 7.85 -2.91 -0.02 5.84 13 9 C 0.20 11.10 6.88 22.95 0.16 11.26 13 10 C -0.45 -23.33 10.84 22.91 0.25 -23.08 13 11 C 0.12 5.84 7.68 85.24 0.65 6.49 13 12 Br 0.04 1.46 34.11 -20.37 -0.69 0.77 13 13 N -0.45 -25.76 12.91 -53.17 -0.69 -26.45 13 14 O -0.11 -6.47 10.49 26.31 0.28 -6.20 13 15 H 0.31 13.69 8.29 -92.71 -0.77 12.92 13 16 H 0.14 6.68 8.06 -2.91 -0.02 6.66 13 Total: -1.00 -61.78 184.88 4.24 -57.54 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.31 Total: 4.45 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 1.75 Total: -25.32 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -0.42 Total: -66.21 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: 0.28 Total: -6.20 kcal Atomic # 14 Polarization: 32.94 SS G_CDS: 2.03 Total: 34.97 kcal Atomic # 35 Polarization: 1.46 SS G_CDS: -0.69 Total: 0.77 kcal Total: -61.78 4.24 -57.54 kcal The number of atoms in the molecule is 16 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797291.mol2 16 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.531 kcal (2) G-P(sol) polarization free energy of solvation -61.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds