Wall clock time and date at job start Mon Mar 30 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30755 * 1 3 3 Si 1.86806 * 119.99411 * 2 1 4 4 H 1.48505 * 109.46664 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47386 * 299.99953 * 3 2 1 6 6 H 1.48499 * 109.46854 * 60.00762 * 3 2 1 7 7 C 1.39974 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.41743 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.47368 * 127.46280 * 180.02562 * 9 7 2 11 11 C 1.35200 * 103.27251 * 179.97438 * 10 9 7 12 12 Br 1.89100 * 126.43932 * 179.97438 * 11 10 9 13 13 O 1.34065 * 107.11748 * 0.24228 * 11 10 9 14 14 N 1.20762 * 113.17294 * 359.54755 * 13 11 10 15 15 H 0.96993 * 120.00147 * 359.97438 * 1 2 3 16 16 H 1.08007 * 128.36497 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 3.7015 1.3466 0.0006 5 1 1.8826 2.3966 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0075 -1.2122 -0.0005 8 1 3.0876 -1.2121 -0.0001 9 6 1.2989 -2.4398 -0.0005 10 6 1.8638 -3.8009 -0.0005 11 6 0.7675 -4.5920 0.0000 12 35 0.7468 -6.4829 -0.0003 13 8 -0.3023 -3.7839 -0.0051 14 7 -0.0123 -2.6116 0.0001 15 1 -0.4850 0.8400 0.0004 16 1 2.9030 -4.0954 -0.0009 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260840702.mol2 16 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:26 Heat of formation + Delta-G solvation = 51.019260 kcal Electronic energy + Delta-G solvation = -7839.685771 eV Core-core repulsion = 5948.359594 eV Total energy + Delta-G solvation = -1891.326177 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 216.948 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -42.63698 -33.99754 -32.01885 -31.11368 -28.62429 -26.28852 -21.48505 -20.37855 -17.13500 -15.88517 -15.80229 -14.76549 -13.55425 -12.61555 -12.22453 -11.33467 -11.12371 -10.83801 -10.80393 -10.38359 -10.10522 -9.73481 -9.05959 -8.42286 -7.96713 -6.63068 -4.59293 1.74715 2.73974 2.98989 3.10608 3.15756 3.92840 3.97342 5.26775 5.27368 6.14125 6.34239 6.80985 6.96099 7.26446 8.24116 8.47700 8.83198 10.28739 10.40012 Molecular weight = 216.95amu Principal moments of inertia in cm(-1) A = 0.144289 B = 0.008434 C = 0.007990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 194.009032 B = 3319.230316 C = 3503.396660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.068 3.932 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.443 4.443 8 H 0.089 0.911 9 C 0.166 3.834 10 C -0.238 4.238 11 C -0.075 4.075 12 Br 0.005 6.995 13 O 0.054 5.946 14 N -0.392 5.392 15 H 0.278 0.722 16 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -8.446 -0.004 8.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.152 4.152 3 Si 0.742 3.258 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.482 4.482 8 H 0.107 0.893 9 C 0.021 3.979 10 C -0.264 4.264 11 C -0.217 4.217 12 Br 0.086 6.914 13 O 0.003 5.997 14 N -0.119 5.119 15 H 0.088 0.912 16 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.319 -8.322 -0.003 8.426 hybrid contribution 1.203 0.789 0.000 1.439 sum 2.522 -7.533 -0.003 7.944 Atomic orbital electron populations 1.69860 1.07220 1.28656 1.34212 1.25890 0.94943 1.01136 0.93255 0.86100 0.80479 0.80742 0.78436 1.18446 1.19927 1.19934 1.18724 0.94061 0.87464 1.47911 0.89312 1.21587 0.87730 0.92371 0.96260 1.23444 0.97832 0.92780 1.12332 1.25506 0.92158 0.89662 1.14341 1.96560 1.98938 0.97662 1.98197 1.84821 1.31839 1.12373 1.70704 1.74792 1.15585 0.89894 1.31633 0.91173 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.77 12.04 55.55 0.67 -21.10 13 2 C 0.07 1.81 5.50 -17.36 -0.10 1.72 13 3 Si 0.92 19.26 29.56 -169.99 -5.02 14.24 13 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 13 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 13 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 13 7 C -0.44 -12.18 9.48 -37.59 -0.36 -12.53 13 8 H 0.09 2.24 7.85 -52.48 -0.41 1.83 13 9 C 0.17 4.67 7.00 -82.64 -0.58 4.09 13 10 C -0.24 -5.65 11.36 -36.95 -0.42 -6.07 13 11 C -0.07 -1.70 7.94 29.65 0.24 -1.46 13 12 Br 0.00 0.08 34.11 -68.01 -2.32 -2.24 13 13 O 0.05 1.41 11.09 17.15 0.19 1.60 13 14 N -0.39 -11.44 10.49 33.33 0.35 -11.09 13 15 H 0.28 7.08 8.29 -40.82 -0.34 6.75 13 16 H 0.15 3.08 8.06 -52.48 -0.42 2.66 13 LS Contribution 184.08 15.07 2.77 2.77 Total: -1.00 -29.68 184.08 -4.54 -34.23 By element: Atomic # 1 Polarization: -4.18 SS G_CDS: 0.03 Total: -4.14 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.21 Total: -14.26 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 1.02 Total: -32.19 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.19 Total: 1.60 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -2.32 Total: -2.24 kcal Total LS contribution 2.77 Total: 2.77 kcal Total: -29.68 -4.54 -34.23 kcal The number of atoms in the molecule is 16 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260840702.mol2 16 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.246 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds