Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30502 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48500 * 109.47485 * 270.00450 * 3 2 1 5 5 H 1.48496 * 109.47071 * 30.00418 * 3 2 1 6 6 H 1.48504 * 109.46958 * 149.99949 * 3 2 1 7 7 C 1.40500 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 164.85914 * 7 2 1 9 9 C 1.40217 * 119.99691 * 344.85330 * 7 2 1 10 10 C 1.39219 * 120.64968 * 332.89718 * 9 7 2 11 11 C 1.41689 * 118.45433 * 179.97438 * 10 9 7 12 12 O 1.22299 * 120.00602 * 180.02562 * 11 10 9 13 13 N 1.33351 * 119.98633 * 359.97438 * 11 10 9 14 14 C 1.33070 * 121.75907 * 359.97438 * 13 11 10 15 15 N 1.33891 * 119.00998 * 180.02562 * 14 13 11 16 16 C 1.31474 * 121.13551 * 179.79554 * 15 14 13 17 17 C 1.39868 * 120.20008 * 0.46564 * 16 15 14 18 18 C 1.35972 * 119.12949 * 359.52365 * 17 16 15 19 19 N 1.36090 * 119.23223 * 0.24949 * 18 17 16 20 20 H 0.96999 * 120.00104 * 359.97438 * 1 2 3 21 21 H 1.08007 * 120.77111 * 359.95539 * 10 9 7 22 22 H 1.08000 * 119.90315 * 180.26272 * 16 15 14 23 23 H 1.07997 * 120.43665 * 179.79629 * 17 16 15 24 24 H 1.08001 * 120.38361 * 180.27327 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 2.4864 2.0466 -1.4000 5 1 1.4365 2.6526 0.7001 6 1 3.5366 1.4402 0.7001 7 6 2.0075 -1.2168 -0.0005 8 1 3.0594 -1.2329 -0.2448 9 6 1.3430 -2.4101 0.3162 10 6 0.2227 -2.4007 1.1428 11 6 -0.4131 -3.6334 1.4320 12 8 -1.3996 -3.6581 2.1545 13 7 0.0636 -4.7666 0.9154 14 6 1.1334 -4.7801 0.1241 15 7 1.5647 -5.9495 -0.3649 16 6 2.6147 -6.0107 -1.1537 17 6 3.3108 -4.8451 -1.4902 18 6 2.8807 -3.6523 -0.9993 19 7 1.7877 -3.6222 -0.1890 20 1 -0.4850 0.8400 0.0004 21 1 -0.1526 -1.4754 1.5543 22 1 2.9428 -6.9642 -1.5403 23 1 4.1758 -4.8914 -2.1352 24 1 3.4003 -2.7392 -1.2497 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260867663.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = 50.046914 kcal Electronic energy + Delta-G solvation = -13927.276791 eV Core-core repulsion = 11420.894830 eV Total energy + Delta-G solvation = -2506.381960 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.43059 -37.68630 -36.01013 -34.18053 -33.79445 -30.30244 -29.95473 -26.83045 -24.58504 -23.54750 -22.14911 -18.46067 -18.15243 -17.55060 -17.16913 -15.56612 -15.31904 -14.84031 -14.28495 -13.91279 -13.15379 -12.90865 -12.75431 -12.27300 -11.93170 -11.60106 -11.57616 -10.97381 -10.72504 -10.21497 -10.08962 -9.72775 -9.37742 -8.28139 -7.79332 -7.24802 -7.20042 -5.17231 0.82806 1.50927 2.55649 2.74994 2.83505 2.90790 3.07770 3.53182 3.68487 4.25566 4.35565 4.77447 5.05453 5.20566 5.45359 5.65202 5.94641 6.08435 6.42259 6.50448 6.65651 6.91840 7.26203 7.52100 7.72387 7.96006 8.13931 8.30227 9.27326 9.64345 9.71009 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.012328 C = 0.008926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.206675 B = 2270.711742 C = 3136.232938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.079 3.921 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.464 4.464 8 H 0.093 0.907 9 C 0.256 3.744 10 C -0.356 4.356 11 C 0.504 3.496 12 O -0.579 6.579 13 N -0.590 5.590 14 C 0.535 3.465 15 N -0.486 5.486 16 C 0.213 3.787 17 C -0.289 4.289 18 C 0.176 3.824 19 N -0.438 5.438 20 H 0.295 0.705 21 H 0.147 0.853 22 H 0.174 0.826 23 H 0.155 0.845 24 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.977 -0.025 -7.403 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.147 4.147 3 Si 0.751 3.249 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.494 4.494 8 H 0.111 0.889 9 C 0.158 3.842 10 C -0.383 4.383 11 C 0.304 3.696 12 O -0.467 6.467 13 N -0.337 5.337 14 C 0.180 3.820 15 N -0.202 5.202 16 C 0.026 3.974 17 C -0.316 4.316 18 C 0.038 3.962 19 N -0.126 5.126 20 H 0.107 0.893 21 H 0.165 0.835 22 H 0.191 0.809 23 H 0.173 0.827 24 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.891 -0.976 -6.196 11.712 hybrid contribution 1.246 2.198 -0.581 2.592 sum 11.137 1.222 -6.777 13.094 Atomic orbital electron populations 1.69690 1.07989 1.31038 1.28161 1.25945 0.94949 1.01699 0.92096 0.85964 0.80383 0.78932 0.79665 1.18875 1.19294 1.17904 1.19209 0.97179 0.89487 1.43514 0.88928 1.18462 0.93609 0.80886 0.91271 1.23092 1.03716 1.00559 1.10941 1.17489 0.85359 0.84837 0.81887 1.90713 1.27565 1.88587 1.39791 1.69085 1.12506 1.33557 1.18558 1.21311 0.89017 0.80259 0.91397 1.68719 1.15599 1.22098 1.13781 1.23461 0.87407 0.99013 0.87535 1.21604 1.07078 0.92139 1.10733 1.22851 0.85761 1.00993 0.86570 1.44213 1.22445 1.10794 1.35192 0.89293 0.83513 0.80878 0.82727 0.80249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.89 10.99 55.58 0.61 -17.28 14 2 C 0.08 1.72 5.19 -17.26 -0.09 1.63 14 3 Si 0.93 15.75 29.59 -169.99 -5.03 10.72 14 4 H -0.26 -4.32 7.11 56.52 0.40 -3.92 14 5 H -0.27 -4.62 7.11 56.52 0.40 -4.21 14 6 H -0.26 -4.23 7.11 56.52 0.40 -3.83 14 7 C -0.46 -10.19 8.25 -37.99 -0.31 -10.51 14 8 H 0.09 1.72 6.45 -52.49 -0.34 1.38 14 9 C 0.26 6.28 6.31 -83.67 -0.53 5.76 14 10 C -0.36 -10.10 8.73 -37.90 -0.33 -10.43 14 11 C 0.50 15.47 7.70 -15.58 -0.12 15.35 14 12 O -0.58 -19.45 17.98 4.64 0.08 -19.36 14 13 N -0.59 -16.86 10.47 -16.01 -0.17 -17.03 14 14 C 0.53 12.75 8.29 -322.77 -2.67 10.07 14 15 N -0.49 -9.61 10.46 -13.78 -0.14 -9.76 14 16 C 0.21 2.83 11.27 -17.10 -0.19 2.64 14 17 C -0.29 -3.39 10.07 -39.78 -0.40 -3.79 14 18 C 0.18 2.71 10.02 -16.48 -0.17 2.54 14 19 N -0.44 -9.46 2.85 -61.95 -0.18 -9.64 14 20 H 0.30 6.34 8.29 -40.82 -0.34 6.00 14 21 H 0.15 4.33 6.30 -52.48 -0.33 4.00 14 22 H 0.17 1.42 8.06 -52.49 -0.42 0.99 14 23 H 0.16 1.09 8.06 -52.49 -0.42 0.67 14 24 H 0.18 2.27 6.19 -52.49 -0.32 1.94 14 LS Contribution 222.83 15.07 3.36 3.36 Total: -1.00 -35.45 222.83 -7.25 -42.70 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -0.97 Total: 3.02 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: -4.81 Total: 13.26 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.12 Total: -53.70 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.08 Total: -19.36 kcal Atomic # 14 Polarization: 15.75 SS G_CDS: -5.03 Total: 10.72 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -35.45 -7.25 -42.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867663.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.747 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds