Wall clock time and date at job start Mon Mar 30 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30502 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48500 * 109.47485 * 270.00450 * 3 2 1 5 5 H 1.48496 * 109.47071 * 30.00418 * 3 2 1 6 6 H 1.48504 * 109.46958 * 149.99949 * 3 2 1 7 7 C 1.40500 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 164.85914 * 7 2 1 9 9 C 1.40217 * 119.99691 * 344.85330 * 7 2 1 10 10 C 1.39219 * 120.64968 * 332.89718 * 9 7 2 11 11 C 1.41689 * 118.45433 * 179.97438 * 10 9 7 12 12 O 1.22299 * 120.00602 * 180.02562 * 11 10 9 13 13 N 1.33351 * 119.98633 * 359.97438 * 11 10 9 14 14 C 1.33070 * 121.75907 * 359.97438 * 13 11 10 15 15 N 1.33891 * 119.00998 * 180.02562 * 14 13 11 16 16 C 1.31474 * 121.13551 * 179.79554 * 15 14 13 17 17 C 1.39868 * 120.20008 * 0.46564 * 16 15 14 18 18 C 1.35972 * 119.12949 * 359.52365 * 17 16 15 19 19 N 1.36090 * 119.23223 * 0.24949 * 18 17 16 20 20 H 0.96999 * 120.00104 * 359.97438 * 1 2 3 21 21 H 1.08007 * 120.77111 * 359.95539 * 10 9 7 22 22 H 1.08000 * 119.90315 * 180.26272 * 16 15 14 23 23 H 1.07997 * 120.43665 * 179.79629 * 17 16 15 24 24 H 1.08001 * 120.38361 * 180.27327 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 2.4864 2.0466 -1.4000 5 1 1.4365 2.6526 0.7001 6 1 3.5366 1.4402 0.7001 7 6 2.0075 -1.2168 -0.0005 8 1 3.0594 -1.2329 -0.2448 9 6 1.3430 -2.4101 0.3162 10 6 0.2227 -2.4007 1.1428 11 6 -0.4131 -3.6334 1.4320 12 8 -1.3996 -3.6581 2.1545 13 7 0.0636 -4.7666 0.9154 14 6 1.1334 -4.7801 0.1241 15 7 1.5647 -5.9495 -0.3649 16 6 2.6147 -6.0107 -1.1537 17 6 3.3108 -4.8451 -1.4902 18 6 2.8807 -3.6523 -0.9993 19 7 1.7877 -3.6222 -0.1890 20 1 -0.4850 0.8400 0.0004 21 1 -0.1526 -1.4754 1.5543 22 1 2.9428 -6.9642 -1.5403 23 1 4.1758 -4.8914 -2.1352 24 1 3.4003 -2.7392 -1.2497 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260867663.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:49 Heat of formation + Delta-G solvation = 22.367157 kcal Electronic energy + Delta-G solvation = -13928.477075 eV Core-core repulsion = 11420.894830 eV Total energy + Delta-G solvation = -2507.582245 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.01914 -39.53968 -37.76215 -35.94364 -35.49771 -31.97117 -31.59827 -28.63639 -26.07830 -25.10529 -23.95718 -20.15054 -19.77465 -19.23828 -18.76324 -17.21675 -16.92786 -16.23428 -15.77878 -15.57473 -14.79968 -14.77707 -14.50220 -13.85645 -13.39477 -13.17438 -13.05382 -12.60049 -12.12094 -11.89456 -11.75466 -11.35299 -10.94393 -10.05499 -9.78350 -9.12497 -8.97289 -7.05966 -0.51263 0.01619 0.90953 1.27298 1.42354 1.56709 1.63143 2.08405 2.23598 2.65214 2.83037 3.47122 3.66321 3.77809 3.98777 4.38148 4.61705 4.73852 4.83527 4.89761 5.05780 5.23663 5.61297 5.67635 5.96778 6.18196 6.38126 6.64998 7.38546 7.68963 7.95687 Molecular weight = 217.06amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.012328 C = 0.008926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.206675 B = 2270.711742 C = 3136.232938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.031 3.969 3 Si 1.014 2.986 4 H -0.243 1.243 5 H -0.279 1.279 6 H -0.238 1.238 7 C -0.446 4.446 8 H 0.141 0.859 9 C 0.261 3.739 10 C -0.426 4.426 11 C 0.483 3.517 12 O -0.656 6.656 13 N -0.656 5.656 14 C 0.537 3.463 15 N -0.527 5.527 16 C 0.232 3.768 17 C -0.236 4.236 18 C 0.143 3.857 19 N -0.448 5.448 20 H 0.303 0.697 21 H 0.116 0.884 22 H 0.238 0.762 23 H 0.226 0.774 24 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.573 0.534 -11.063 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.192 4.192 3 Si 0.831 3.169 4 H -0.166 1.166 5 H -0.204 1.204 6 H -0.161 1.161 7 C -0.475 4.475 8 H 0.159 0.841 9 C 0.161 3.839 10 C -0.453 4.453 11 C 0.288 3.712 12 O -0.551 6.551 13 N -0.407 5.407 14 C 0.183 3.817 15 N -0.246 5.246 16 C 0.050 3.950 17 C -0.260 4.260 18 C 0.009 3.991 19 N -0.136 5.136 20 H 0.114 0.886 21 H 0.134 0.866 22 H 0.254 0.746 23 H 0.243 0.757 24 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 15.619 -0.478 -9.967 18.534 hybrid contribution -0.113 1.991 0.211 2.006 sum 15.506 1.513 -9.756 18.382 Atomic orbital electron populations 1.69842 1.10676 1.32782 1.27354 1.27364 0.95435 1.05957 0.90416 0.84721 0.78855 0.72713 0.80638 1.16649 1.20391 1.16079 1.20024 0.99073 0.88534 1.39875 0.84122 1.18594 0.92231 0.82970 0.90117 1.22563 1.07987 0.98457 1.16287 1.17808 0.85131 0.86430 0.81880 1.90583 1.30913 1.89642 1.43943 1.68846 1.16357 1.32956 1.22497 1.21520 0.88119 0.81993 0.90062 1.68854 1.19023 1.19908 1.16821 1.24763 0.84175 1.02534 0.83519 1.22472 1.06678 0.89447 1.07397 1.23769 0.84447 1.04404 0.86457 1.44135 1.24254 1.09056 1.36131 0.88561 0.86577 0.74595 0.75722 0.76914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.71 10.99 21.92 0.24 -38.47 14 2 C 0.03 1.32 5.19 85.44 0.44 1.77 14 3 Si 1.01 29.61 29.59 68.60 2.03 31.64 14 4 H -0.24 -6.34 7.11 99.48 0.71 -5.63 14 5 H -0.28 -8.60 7.11 99.48 0.71 -7.90 14 6 H -0.24 -6.32 7.11 99.48 0.71 -5.62 14 7 C -0.45 -18.67 8.25 23.30 0.19 -18.48 14 8 H 0.14 4.41 6.45 -2.91 -0.02 4.39 14 9 C 0.26 13.08 6.31 38.78 0.24 13.33 14 10 C -0.43 -26.43 8.73 23.36 0.20 -26.23 14 11 C 0.48 32.98 7.70 85.31 0.66 33.63 14 12 O -0.66 -49.63 17.98 -6.30 -0.11 -49.75 14 13 N -0.66 -40.64 10.47 -323.31 -3.38 -44.02 14 14 C 0.54 26.17 8.29 261.47 2.17 28.33 14 15 N -0.53 -19.96 10.46 -197.50 -2.07 -22.03 14 16 C 0.23 4.75 11.27 85.14 0.96 5.71 14 17 C -0.24 -3.66 10.07 22.14 0.22 -3.44 14 18 C 0.14 3.64 10.02 83.51 0.84 4.48 14 19 N -0.45 -18.95 2.85 -349.90 -1.00 -19.94 14 20 H 0.30 13.41 8.29 -92.71 -0.77 12.64 14 21 H 0.12 7.63 6.30 -2.91 -0.02 7.61 14 22 H 0.24 1.83 8.06 -2.91 -0.02 1.80 14 23 H 0.23 0.56 8.06 -2.91 -0.02 0.54 14 24 H 0.21 3.85 6.19 -2.91 -0.02 3.84 14 Total: -1.00 -94.68 222.83 2.89 -91.79 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.25 Total: 11.67 kcal Atomic # 6 Polarization: 33.18 SS G_CDS: 5.93 Total: 39.11 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -6.21 Total: -124.46 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.11 Total: -49.75 kcal Atomic # 14 Polarization: 29.61 SS G_CDS: 2.03 Total: 31.64 kcal Total: -94.68 2.89 -91.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867663.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.158 kcal (2) G-P(sol) polarization free energy of solvation -94.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds