Wall clock time and date at job start Mon Mar 30 2020 02:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99741 * 2 1 4 4 C 1.38214 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00116 * 359.97438 * 5 4 3 7 7 C 1.38209 * 119.99935 * 179.72199 * 2 1 3 8 8 C 1.50697 * 120.00241 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47503 * 84.99707 * 8 7 2 10 10 H 1.09009 * 115.54767 * 330.72123 * 9 8 7 11 11 C 1.52999 * 117.50189 * 116.39390 * 9 8 7 12 12 C 1.52993 * 60.00180 * 107.49156 * 11 9 8 13 13 H 1.09001 * 117.50242 * 252.50982 * 12 11 9 14 14 C 1.50703 * 117.49894 * 107.49074 * 12 11 9 15 15 H 1.08003 * 119.99923 * 291.37759 * 14 12 11 16 16 C 1.37879 * 119.99938 * 111.38118 * 14 12 11 17 17 N 1.31511 * 119.99859 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 119.99982 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47181 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47611 * 119.99478 * 18 16 14 21 21 H 1.48501 * 109.47261 * 239.99937 * 18 16 14 22 22 H 1.09001 * 109.46953 * 89.99972 * 1 2 3 23 23 H 1.09000 * 109.47318 * 209.99570 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.00200 * 1 2 3 25 25 H 1.07997 * 120.00249 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.00085 * 180.02562 * 4 3 2 27 27 H 1.08001 * 119.99801 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.00188 * 180.02562 * 6 5 4 29 29 H 1.08996 * 109.47418 * 204.99840 * 8 7 2 30 30 H 1.09002 * 109.47180 * 324.99602 * 8 7 2 31 31 H 1.09001 * 117.49826 * 214.98084 * 11 9 8 32 32 H 1.09003 * 117.49638 * 359.97438 * 11 9 8 33 33 H 0.97002 * 119.99662 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1970 0.0027 7 6 2.1981 -1.1969 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0812 -2.8875 -1.4238 10 1 0.9375 -2.0546 -2.1122 11 6 1.6930 -4.1719 -1.9868 12 6 0.2077 -4.1278 -1.6226 13 1 -0.1082 -4.6692 -0.7308 14 6 -0.7861 -4.1047 -2.7552 15 1 -0.8612 -3.2341 -3.3900 16 6 -1.5995 -5.1948 -2.9811 17 7 -1.5077 -6.2550 -2.2084 18 14 -2.8308 -5.1665 -4.3855 19 1 -2.7367 -3.8682 -5.1002 20 1 -2.5318 -6.2739 -5.3285 21 1 -4.2033 -5.3344 -3.8439 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6583 2.1327 -0.0004 26 1 4.1205 2.1327 0.0010 27 1 5.3518 0.0001 0.0024 28 1 4.1207 -2.1322 0.0039 29 1 2.0694 -3.2803 0.4497 30 1 0.5337 -2.3931 0.6002 31 1 1.9514 -4.1842 -3.0457 32 1 2.3547 -4.7421 -1.3347 33 1 -2.0797 -7.0221 -2.3675 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260947225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:40 Heat of formation + Delta-G solvation = 12.300508 kcal Electronic energy + Delta-G solvation = -13697.235881 eV Core-core repulsion = 11494.016462 eV Total energy + Delta-G solvation = -2203.219419 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.48640 -38.15954 -34.61192 -33.72598 -32.67058 -28.70510 -27.63320 -26.90853 -22.92202 -22.52199 -21.82555 -20.83301 -18.62420 -17.14232 -16.60376 -16.48420 -15.84879 -15.38203 -15.02438 -14.33191 -13.95473 -13.87525 -13.78244 -13.18791 -13.02140 -12.95863 -12.83700 -12.70211 -12.27127 -12.08392 -11.82538 -11.76307 -11.40834 -11.07637 -10.37288 -10.15171 -9.60732 -9.36037 -8.21254 -6.26746 0.53029 0.55790 1.39433 1.40389 1.53350 2.39246 2.91710 2.98825 3.52969 3.91093 4.03343 4.16045 4.23682 4.33296 4.46672 4.52797 4.66932 4.71046 4.79874 4.82950 4.92223 4.99487 5.03431 5.07330 5.12915 5.30045 5.38822 5.50751 5.61472 5.66378 5.69294 5.78420 5.90531 6.22483 6.34441 6.79892 7.36028 8.90483 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.045926 B = 0.006321 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.523824 B = 4428.880551 C = 4718.297549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.098 4.098 3 C -0.128 4.128 4 C -0.128 4.128 5 C -0.131 4.131 6 C -0.128 4.128 7 C -0.088 4.088 8 C -0.041 4.041 9 C -0.144 4.144 10 H 0.076 0.924 11 C -0.203 4.203 12 C 0.000 4.000 13 H 0.050 0.950 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.275 1.275 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.140 0.860 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.787 13.186 4.938 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.146 4.146 5 C -0.148 4.148 6 C -0.146 4.146 7 C -0.088 4.088 8 C -0.078 4.078 9 C -0.163 4.163 10 H 0.094 0.906 11 C -0.240 4.240 12 C -0.018 4.018 13 H 0.068 0.932 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.200 1.200 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.158 0.842 26 H 0.165 0.835 27 H 0.160 0.840 28 H 0.141 0.859 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.704 13.008 4.969 15.913 hybrid contribution -0.595 -0.578 -0.752 1.119 sum 7.108 12.430 4.217 14.927 Atomic orbital electron populations 1.20848 0.91028 1.03112 1.02284 1.20024 0.96641 0.93026 1.00139 1.21293 0.94925 0.97462 1.00861 1.21434 0.94180 0.98881 1.00099 1.21396 1.00877 0.92125 1.00444 1.21236 0.93416 0.99166 1.00752 1.19875 0.94301 0.94495 1.00097 1.20110 0.99115 0.93982 0.94630 1.22113 1.07020 0.91033 0.96093 0.90618 1.23083 1.00240 1.01471 0.99247 1.19850 0.88906 0.95834 0.97215 0.93196 1.21041 1.19280 1.01064 1.13750 0.92836 1.25874 0.98901 0.94878 0.98940 1.70089 1.40388 1.05823 1.39986 0.85422 0.78523 0.78364 0.78879 1.18968 1.20291 1.19994 0.91944 0.91982 0.89843 0.84212 0.83530 0.83974 0.85900 0.91551 0.91121 0.91544 0.90307 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.24 9.61 71.24 0.68 -2.55 16 2 C -0.10 -2.88 5.88 -19.86 -0.12 -2.99 16 3 C -0.13 -3.09 9.70 22.27 0.22 -2.87 16 4 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 5 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 6 C -0.13 -3.63 9.68 22.27 0.22 -3.42 16 7 C -0.09 -2.81 5.09 -19.87 -0.10 -2.91 16 8 C -0.04 -1.50 5.12 29.85 0.15 -1.34 16 9 C -0.14 -6.27 5.43 -10.79 -0.06 -6.33 16 10 H 0.08 3.41 8.07 -2.38 -0.02 3.39 16 11 C -0.20 -9.44 9.88 30.59 0.30 -9.13 16 12 C 0.00 0.02 5.30 -11.54 -0.06 -0.04 16 13 H 0.05 2.87 7.90 -2.39 -0.02 2.85 16 14 C -0.51 -29.56 9.20 25.60 0.24 -29.32 16 15 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 16 C 0.01 0.75 5.46 84.66 0.46 1.21 16 17 N -0.92 -55.45 13.13 21.45 0.28 -55.17 16 18 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.06 1.86 6.02 -2.39 -0.01 1.84 16 24 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 25 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 26 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 27 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 28 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.07 2.31 7.79 -2.39 -0.02 2.29 16 30 H 0.07 2.55 6.16 -2.39 -0.01 2.54 16 31 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.08 3.38 8.03 -2.39 -0.02 3.36 16 33 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -63.29 281.12 5.76 -57.53 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.07 Total: 16.54 kcal Atomic # 6 Polarization: -67.48 SS G_CDS: 2.38 Total: -65.10 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.28 Total: -55.17 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -63.29 5.76 -57.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.833 kcal (2) G-P(sol) polarization free energy of solvation -63.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds