Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.22057 * 2 1 4 4 C 1.52741 * 109.25186 * 119.44908 * 2 1 3 5 5 C 1.53337 * 108.37170 * 171.34126 * 4 2 1 6 6 C 1.52726 * 108.37328 * 290.07618 * 5 4 2 7 7 H 1.09002 * 109.25673 * 171.32068 * 6 5 4 8 8 C 1.50697 * 109.25497 * 290.79185 * 6 5 4 9 9 H 1.07995 * 120.00247 * 87.05794 * 8 6 5 10 10 C 1.37885 * 119.99872 * 267.05634 * 8 6 5 11 11 N 1.31518 * 119.99897 * 355.08122 * 10 8 6 12 12 Si 1.86795 * 119.99864 * 175.08133 * 10 8 6 13 13 H 1.48507 * 109.47155 * 180.02562 * 12 10 8 14 14 H 1.48502 * 109.47139 * 299.99772 * 12 10 8 15 15 H 1.48489 * 109.47676 * 60.00016 * 12 10 8 16 16 C 1.50635 * 110.58648 * 51.07723 * 6 5 4 17 17 C 1.38911 * 117.74418 * 162.51103 * 16 6 5 18 18 C 1.37940 * 120.54270 * 179.75476 * 17 16 6 19 19 C 1.38260 * 119.76801 * 0.02562 * 18 17 16 20 20 C 1.37924 * 119.77793 * 0.10708 * 19 18 17 21 21 C 1.37663 * 122.56639 * 342.44506 * 16 6 5 22 22 H 1.09002 * 109.47075 * 300.54734 * 1 2 3 23 23 H 1.08998 * 109.47076 * 60.55189 * 1 2 3 24 24 H 1.09000 * 109.46972 * 180.55293 * 1 2 3 25 25 H 1.09001 * 109.68321 * 51.62453 * 4 2 1 26 26 H 1.08997 * 109.71544 * 291.07796 * 4 2 1 27 27 H 1.09003 * 109.68145 * 170.35570 * 5 4 2 28 28 H 1.08999 * 109.71248 * 49.81904 * 5 4 2 29 29 H 0.97002 * 119.99564 * 180.02562 * 11 10 8 30 30 H 1.07994 * 119.73188 * 359.75217 * 17 16 6 31 31 H 1.08000 * 120.11148 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.10969 * 180.12189 * 19 18 17 33 33 H 1.08000 * 119.73076 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8888 1.0292 0.0000 4 6 2.0336 -0.7090 1.2557 5 6 3.5512 -0.8908 1.1322 6 6 3.8248 -1.9294 0.0463 7 1 4.8943 -1.9584 -0.1620 8 6 3.3758 -3.2841 0.5299 9 1 2.3525 -3.5974 0.3850 10 6 4.2715 -4.1238 1.1575 11 7 5.5388 -3.7840 1.2482 12 14 3.6849 -5.7440 1.8789 13 1 4.8334 -6.4565 2.4943 14 1 2.6541 -5.4802 2.9148 15 1 3.1009 -6.5829 0.8019 16 6 3.0827 -1.5821 -1.2177 17 6 3.4954 -2.1887 -2.3973 18 6 2.8535 -1.9164 -3.5874 19 6 1.7908 -1.0321 -3.6075 20 6 1.3813 -0.4266 -2.4379 21 6 2.0267 -0.6992 -1.2383 22 1 -0.3633 0.5223 0.8850 23 1 -0.3633 0.5052 -0.8949 24 1 -0.3633 -1.0276 0.0099 25 1 1.5532 -1.6833 1.3449 26 1 1.8065 -0.1057 2.1346 27 1 3.9579 -1.2372 2.0824 28 1 4.0140 0.0573 0.8586 29 1 6.1689 -4.3750 1.6894 30 1 4.3256 -2.8792 -2.3824 31 1 3.1804 -2.3916 -4.5005 32 1 1.2830 -0.8163 -4.5360 33 1 0.5514 0.2643 -2.4545 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = -2.755235 kcal Electronic energy + Delta-G solvation = -14548.558483 eV Core-core repulsion = 12344.686198 eV Total energy + Delta-G solvation = -2203.872285 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.36043 -35.58515 -33.75364 -31.48815 -29.31743 -28.84947 -26.45617 -23.89940 -22.20421 -21.77489 -20.23842 -18.47969 -16.08863 -15.78604 -14.81772 -14.67458 -14.29477 -13.45665 -13.15754 -12.91799 -12.41783 -12.31016 -11.95259 -11.62835 -11.27412 -11.12527 -10.96151 -10.88980 -10.61581 -10.43366 -10.36677 -9.93208 -9.34674 -9.08174 -8.92919 -8.45184 -7.96164 -7.61853 -6.03707 -4.06455 2.15147 2.26887 3.31024 3.35519 3.38946 4.39664 4.62853 5.24828 5.36414 5.40350 5.61427 5.68951 5.74598 5.86971 6.09034 6.13363 6.17799 6.31160 6.36279 6.43879 6.57905 6.67948 6.76477 6.84935 6.91987 7.12099 7.19847 7.28965 7.29313 7.48802 7.66509 7.83422 7.90151 8.00312 8.38342 9.00637 9.55843 11.04225 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.011141 C = 0.009457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.967817 B = 2512.566300 C = 2960.073035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 H 0.067 0.933 4 C -0.107 4.107 5 C -0.101 4.101 6 C 0.061 3.939 7 H 0.069 0.931 8 C -0.498 4.498 9 H 0.054 0.946 10 C 0.065 3.935 11 N -0.893 5.893 12 Si 0.890 3.110 13 H -0.287 1.287 14 H -0.276 1.276 15 H -0.277 1.277 16 C -0.023 4.023 17 C -0.113 4.113 18 C -0.133 4.133 19 C -0.151 4.151 20 C -0.128 4.128 21 C -0.090 4.090 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 5.859 -4.082 9.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 H 0.085 0.915 4 C -0.144 4.144 5 C -0.139 4.139 6 C 0.043 3.957 7 H 0.087 0.913 8 C -0.536 4.536 9 H 0.072 0.928 10 C -0.137 4.137 11 N -0.531 5.531 12 Si 0.718 3.282 13 H -0.213 1.213 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.023 4.023 17 C -0.132 4.132 18 C -0.151 4.151 19 C -0.169 4.169 20 C -0.146 4.146 21 C -0.090 4.090 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.114 5.785 -4.006 9.322 hybrid contribution -0.301 -1.010 0.295 1.094 sum -6.415 4.775 -3.711 8.816 Atomic orbital electron populations 1.21897 0.95606 1.01783 1.00635 1.19947 0.94616 0.98319 0.93589 0.91518 1.21547 0.98109 1.00268 0.94501 1.21598 0.93761 0.97397 1.01178 1.17992 0.96961 0.93824 0.86929 0.91347 1.20886 0.96126 0.99517 1.37047 0.92812 1.24959 0.94775 0.97877 0.96082 1.69909 1.01988 1.37706 1.43504 0.86684 0.78223 0.83729 0.79574 1.21308 1.20171 1.20248 1.20438 0.93677 0.91385 0.96809 1.21225 1.00374 0.99570 0.91982 1.20964 0.97139 0.99273 0.97689 1.20765 0.98848 0.99941 0.97390 1.21041 1.00060 1.00795 0.92687 1.19596 0.96674 0.98647 0.94097 0.93109 0.93098 0.92607 0.90880 0.93771 0.92185 0.95358 0.92802 0.86389 0.87399 0.87571 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.72 37.16 0.32 -1.79 16 2 C -0.05 -0.82 2.77 -91.94 -0.25 -1.08 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.11 -2.08 5.21 -26.69 -0.14 -2.22 16 5 C -0.10 -2.26 5.41 -26.70 -0.14 -2.40 16 6 C 0.06 1.51 2.27 -93.10 -0.21 1.30 16 7 H 0.07 1.88 7.25 -51.93 -0.38 1.50 16 8 C -0.50 -13.34 7.19 -34.44 -0.25 -13.59 16 9 H 0.05 1.47 7.67 -52.49 -0.40 1.07 16 10 C 0.06 1.77 5.45 -17.82 -0.10 1.67 16 11 N -0.89 -25.33 12.78 55.43 0.71 -24.62 16 12 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C -0.02 -0.51 5.00 -104.61 -0.52 -1.03 16 17 C -0.11 -2.40 9.52 -39.44 -0.38 -2.78 16 18 C -0.13 -2.41 10.05 -39.68 -0.40 -2.81 16 19 C -0.15 -2.57 10.05 -39.69 -0.40 -2.97 16 20 C -0.13 -2.24 9.04 -39.44 -0.36 -2.60 16 21 C -0.09 -1.78 5.43 -104.61 -0.57 -2.35 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.56 7.07 -51.93 -0.37 1.19 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.43 8.11 -51.93 -0.42 1.01 16 28 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.12 2.56 8.05 -52.49 -0.42 2.14 16 31 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.11 1.63 6.33 -52.49 -0.33 1.29 16 LS Contribution 265.68 15.07 4.00 4.00 Total: -1.00 -27.78 265.68 -8.44 -36.22 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.74 Total: 0.87 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: -3.39 Total: -32.64 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.71 Total: -24.62 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.78 -8.44 -36.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.469 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds