Wall clock time and date at job start Mon Mar 30 2020 02:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28994 * 124.90085 * 2 1 4 4 C 1.31828 * 117.13179 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.76659 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47258 * 90.02615 * 5 4 3 7 7 H 1.07999 * 120.00297 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00200 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00153 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99812 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47331 * 90.00567 * 10 8 6 12 12 H 1.48502 * 109.47480 * 210.00294 * 10 8 6 13 13 H 1.48504 * 109.47268 * 330.00302 * 10 8 6 14 14 C 1.33753 * 114.46512 * 0.02562 * 4 3 2 15 15 Cl 1.73598 * 126.04702 * 180.02562 * 14 4 3 16 16 S 1.70972 * 124.90441 * 179.97438 * 2 1 3 17 17 H 1.09007 * 109.46829 * 90.00070 * 1 2 3 18 18 H 1.08992 * 109.47335 * 210.00324 * 1 2 3 19 19 H 1.09000 * 109.46823 * 330.00477 * 1 2 3 20 20 H 1.09005 * 109.46875 * 210.02683 * 5 4 3 21 21 H 1.09001 * 109.47345 * 330.02326 * 5 4 3 22 22 H 0.97007 * 120.00091 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2451 1.0579 0.0000 4 6 3.5513 0.8797 0.0005 5 6 4.5307 2.0251 0.0000 6 6 4.8572 2.4074 1.4206 7 1 4.4009 1.8747 2.2418 8 6 5.7379 3.4381 1.6721 9 7 6.0224 3.7721 2.9119 10 14 6.5267 4.3601 0.2519 11 1 5.6715 5.5140 -0.1252 12 1 7.8666 4.8507 0.6634 13 1 6.6693 3.4485 -0.9118 14 6 3.9355 -0.4014 0.0004 15 17 5.5734 -0.9766 0.0017 16 16 2.4853 -1.4022 0.0006 17 1 -0.3633 0.0000 -1.0277 18 1 -0.3633 -0.8899 0.5138 19 1 -0.3633 0.8900 0.5138 20 1 5.4432 1.7225 -0.5138 21 1 4.0905 2.8794 -0.5142 22 1 6.6423 4.4970 3.0888 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261035258.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:04 Heat of formation + Delta-G solvation = 6.983395 kcal Electronic energy + Delta-G solvation = -10302.124152 eV Core-core repulsion = 8201.902087 eV Total energy + Delta-G solvation = -2100.222064 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.002 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.91902 -37.72163 -35.39334 -33.57307 -30.98392 -28.71220 -25.64338 -23.13382 -20.80044 -19.05814 -18.86259 -16.85606 -16.32212 -15.91970 -15.10222 -14.75049 -14.27707 -14.02029 -13.78686 -13.34023 -13.07936 -12.79298 -12.49157 -12.42160 -11.95806 -11.77596 -11.56693 -10.80244 -10.61793 -10.18763 -9.48701 -8.31258 -6.36151 -0.40040 -0.06750 0.55016 1.30535 1.35651 1.37092 1.48601 1.76910 2.33892 3.01461 3.22013 4.05472 4.25079 4.62984 4.71622 4.80118 5.00394 5.14121 5.25520 5.49514 6.19405 6.64753 6.77444 7.25381 8.85418 Molecular weight = 217.00amu Principal moments of inertia in cm(-1) A = 0.034712 B = 0.010633 C = 0.009072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.437267 B = 2632.610916 C = 3085.673548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.049 3.951 3 N -0.498 5.498 4 C 0.105 3.895 5 C 0.054 3.946 6 C -0.509 4.509 7 H 0.024 0.976 8 C 0.014 3.986 9 N -0.945 5.945 10 Si 0.945 3.055 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.245 1.245 14 C -0.225 4.225 15 Cl -0.001 7.001 16 S 0.193 5.807 17 H 0.111 0.889 18 H 0.111 0.889 19 H 0.088 0.912 20 H 0.045 0.955 21 H 0.033 0.967 22 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.447 -10.985 -9.129 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.229 4.229 3 N -0.215 5.215 4 C -0.028 4.028 5 C 0.015 3.985 6 C -0.547 4.547 7 H 0.042 0.958 8 C -0.183 4.183 9 N -0.585 5.585 10 Si 0.767 3.233 11 H -0.190 1.190 12 H -0.203 1.203 13 H -0.168 1.168 14 C -0.371 4.371 15 Cl 0.027 6.973 16 S 0.446 5.554 17 H 0.130 0.870 18 H 0.129 0.871 19 H 0.107 0.893 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.667 -11.510 -9.025 17.001 hybrid contribution 1.456 1.341 0.095 1.982 sum -7.211 -10.169 -8.930 15.335 Atomic orbital electron populations 1.20727 0.81417 1.05611 1.05774 1.27968 1.03767 0.90533 1.00621 1.66331 1.04057 1.32844 1.18224 1.20505 0.90663 0.94310 0.97289 1.18267 0.92299 0.91144 0.96815 1.20815 1.26057 1.17171 0.90682 0.95805 1.25853 0.96521 0.97441 0.98530 1.70036 1.36528 1.30734 1.21222 0.85742 0.78120 0.79495 0.79934 1.18996 1.20307 1.16847 1.26643 0.92951 0.96711 1.20802 1.98312 1.14311 1.87476 1.97160 1.83199 0.93294 1.09305 1.69649 0.87025 0.87095 0.89310 0.93647 0.94880 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.46 71.24 0.75 -0.66 14 2 C 0.05 1.50 7.38 88.53 0.65 2.15 14 3 N -0.50 -20.71 10.53 -179.31 -1.89 -22.60 14 4 C 0.10 4.74 5.94 41.54 0.25 4.99 14 5 C 0.05 2.77 4.25 29.10 0.12 2.89 14 6 C -0.51 -30.55 9.65 25.60 0.25 -30.30 14 7 H 0.02 1.60 7.98 -2.91 -0.02 1.58 14 8 C 0.01 0.84 5.47 84.65 0.46 1.30 14 9 N -0.95 -60.10 13.96 21.45 0.30 -59.80 14 10 Si 0.94 44.80 27.47 68.60 1.88 46.69 14 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 14 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 14 13 H -0.25 -10.79 6.54 99.48 0.65 -10.14 14 14 C -0.22 -8.81 7.18 66.80 0.48 -8.33 14 15 Cl 0.00 -0.03 28.42 -2.72 -0.08 -0.11 14 16 S 0.19 5.47 23.18 -56.49 -1.31 4.16 14 17 H 0.11 1.56 8.14 -2.38 -0.02 1.54 14 18 H 0.11 1.39 8.14 -2.39 -0.02 1.37 14 19 H 0.09 1.77 8.14 -2.39 -0.02 1.75 14 20 H 0.05 2.22 6.60 -2.38 -0.02 2.21 14 21 H 0.03 1.66 7.57 -2.39 -0.02 1.65 14 22 H 0.27 15.84 8.31 -92.70 -0.77 15.07 14 Total: -1.00 -71.10 229.53 3.05 -68.05 By element: Atomic # 1 Polarization: -9.60 SS G_CDS: 1.18 Total: -8.42 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 2.96 Total: -27.96 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.59 Total: -82.41 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.31 Total: 4.16 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -71.10 3.05 -68.05 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261035258.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.035 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds