Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38519 * 120.01634 * 264.72168 * 10 9 7 12 12 C 1.38344 * 120.18181 * 179.65512 * 11 10 9 13 13 C 1.37984 * 120.32172 * 0.65678 * 12 11 10 14 14 C 1.39583 * 119.82549 * 359.65552 * 13 12 11 15 15 C 1.37526 * 120.02527 * 85.00072 * 10 9 7 16 16 C 1.50829 * 133.24324 * 359.97438 * 15 10 9 17 17 N 1.46735 * 106.25395 * 180.02562 * 16 15 10 18 18 C 1.34420 * 108.75790 * 359.97438 * 17 16 15 19 19 O 1.21549 * 124.85274 * 179.97438 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08004 * 119.90891 * 359.97438 * 11 10 9 24 24 H 1.08004 * 119.84057 * 180.33212 * 12 11 10 25 25 H 1.08000 * 120.08624 * 179.67437 * 13 12 11 26 26 H 1.08998 * 110.09784 * 299.19871 * 16 15 10 27 27 H 1.08996 * 110.10109 * 60.80321 * 16 15 10 28 28 H 0.96995 * 125.61806 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5967 -4.2377 -1.2073 12 6 3.5009 -5.2848 -1.2165 13 6 4.0340 -5.7553 -0.0340 14 6 3.6645 -5.1670 1.1767 15 6 2.7561 -4.1056 1.1738 16 6 2.5699 -3.6998 2.6145 17 7 3.4228 -4.5934 3.4064 18 6 4.0530 -5.4397 2.5736 19 8 4.8325 -6.3050 2.9216 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.1794 -3.8783 -2.1364 24 1 3.7869 -5.7396 -2.1535 25 1 4.7355 -6.5763 -0.0452 26 1 2.8803 -2.6645 2.7552 27 1 1.5267 -3.8215 2.9061 28 1 3.5164 -4.5763 4.3717 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118560.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = -11.604014 kcal Electronic energy + Delta-G solvation = -13839.472710 eV Core-core repulsion = 11433.957708 eV Total energy + Delta-G solvation = -2405.515002 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.63912 -37.78003 -35.52336 -33.59121 -31.44134 -30.24618 -27.36653 -26.13586 -23.78294 -22.41719 -21.09155 -18.98876 -17.07245 -16.46571 -16.05133 -15.48756 -15.33815 -14.59662 -14.28984 -13.43475 -13.09811 -13.02596 -12.56860 -12.41407 -11.77143 -11.56657 -11.26312 -11.05802 -10.72126 -10.53493 -9.93164 -9.60755 -9.41159 -9.08055 -8.54108 -8.43448 -7.96664 -6.16206 -4.20879 1.24339 1.85684 3.19705 3.21887 3.30905 3.35477 3.47123 4.24827 4.39487 4.59943 4.88219 5.18901 5.35186 5.49862 5.72630 5.80044 5.90891 6.00633 6.19177 6.49055 6.63169 6.79321 6.89352 7.04886 7.17430 7.31924 7.45068 7.61280 7.79449 8.16990 8.46552 8.84807 9.44292 10.93442 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.008621 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.282239 B = 3246.957813 C = 3649.789125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.021 4.021 11 C -0.091 4.091 12 C -0.131 4.131 13 C -0.073 4.073 14 C -0.170 4.170 15 C -0.080 4.080 16 C 0.142 3.858 17 N -0.725 5.725 18 C 0.564 3.436 19 O -0.547 6.547 20 H 0.263 0.737 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.129 0.871 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -6.350 1.527 7.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.022 4.022 11 C -0.110 4.110 12 C -0.149 4.149 13 C -0.092 4.092 14 C -0.173 4.173 15 C -0.081 4.081 16 C 0.019 3.981 17 N -0.381 5.381 18 C 0.352 3.648 19 O -0.426 6.426 20 H 0.072 0.928 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.147 0.853 24 H 0.141 0.859 25 H 0.139 0.861 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.480 -6.673 1.643 7.703 hybrid contribution 0.414 1.095 0.360 1.225 sum 3.894 -5.578 2.002 7.091 Atomic orbital electron populations 1.69957 1.06028 1.26892 1.50116 1.24990 0.94851 0.99247 0.94990 0.86505 0.80178 0.83468 0.77746 1.19641 1.20868 1.20895 1.21053 0.93071 0.89672 1.51525 0.92364 1.18375 0.92426 0.89344 0.98785 1.19944 0.96678 0.95599 0.89951 1.21313 0.96685 0.94901 0.98078 1.21028 0.98454 0.98050 0.97348 1.20581 0.99089 0.99114 0.90404 1.20278 1.02633 1.00677 0.93751 1.20160 0.97405 0.95900 0.94673 1.20459 0.95398 0.94818 0.87455 1.45858 1.46734 1.36016 1.09443 1.18383 0.79483 0.80406 0.86493 1.90741 1.35935 1.34068 1.81889 0.92763 0.95005 0.94978 0.85323 0.85862 0.86111 0.87846 0.88819 0.74032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 13.29 55.43 0.74 -23.96 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 15 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.52 -13.27 9.09 -34.44 -0.31 -13.58 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.05 1.10 4.99 -29.03 -0.14 0.96 15 10 C -0.02 -0.42 5.06 -104.78 -0.53 -0.95 15 11 C -0.09 -1.60 9.69 -39.44 -0.38 -1.99 15 12 C -0.13 -2.01 10.02 -39.64 -0.40 -2.41 15 13 C -0.07 -1.20 10.10 -39.17 -0.40 -1.59 15 14 C -0.17 -3.09 6.26 -105.05 -0.66 -3.75 15 15 C -0.08 -1.48 6.15 -104.27 -0.64 -2.13 15 16 C 0.14 2.26 7.46 -5.00 -0.04 2.22 15 17 N -0.73 -10.81 6.41 -62.40 -0.40 -11.21 15 18 C 0.56 10.25 8.34 -12.63 -0.11 10.14 15 19 O -0.55 -11.31 18.04 5.32 0.10 -11.21 15 20 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 21 H 0.03 0.76 7.98 -51.93 -0.41 0.35 15 22 H 0.03 0.79 8.05 -51.93 -0.42 0.37 15 23 H 0.13 2.09 8.06 -52.48 -0.42 1.67 15 24 H 0.12 1.49 8.06 -52.48 -0.42 1.07 15 25 H 0.12 1.78 8.06 -52.49 -0.42 1.35 15 26 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 27 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15 28 H 0.42 4.96 8.96 -40.82 -0.37 4.59 15 LS Contribution 252.73 15.07 3.81 3.81 Total: -1.00 -30.00 252.73 -7.33 -37.33 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -2.85 Total: 1.44 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -3.70 Total: -11.56 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.34 Total: -35.17 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.10 Total: -11.21 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.00 -7.33 -37.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118560.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.726 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds