Wall clock time and date at job start Mon Mar 30 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38519 * 120.01634 * 264.72168 * 10 9 7 12 12 C 1.38344 * 120.18181 * 179.65512 * 11 10 9 13 13 C 1.37984 * 120.32172 * 0.65678 * 12 11 10 14 14 C 1.39583 * 119.82549 * 359.65552 * 13 12 11 15 15 C 1.37526 * 120.02527 * 85.00072 * 10 9 7 16 16 C 1.50829 * 133.24324 * 359.97438 * 15 10 9 17 17 N 1.46735 * 106.25395 * 180.02562 * 16 15 10 18 18 C 1.34420 * 108.75790 * 359.97438 * 17 16 15 19 19 O 1.21549 * 124.85274 * 179.97438 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08004 * 119.90891 * 359.97438 * 11 10 9 24 24 H 1.08004 * 119.84057 * 180.33212 * 12 11 10 25 25 H 1.08000 * 120.08624 * 179.67437 * 13 12 11 26 26 H 1.08998 * 110.09784 * 299.19871 * 16 15 10 27 27 H 1.08996 * 110.10109 * 60.80321 * 16 15 10 28 28 H 0.96995 * 125.61806 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5967 -4.2377 -1.2073 12 6 3.5009 -5.2848 -1.2165 13 6 4.0340 -5.7553 -0.0340 14 6 3.6645 -5.1670 1.1767 15 6 2.7561 -4.1056 1.1738 16 6 2.5699 -3.6998 2.6145 17 7 3.4228 -4.5934 3.4064 18 6 4.0530 -5.4397 2.5736 19 8 4.8325 -6.3050 2.9216 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.1794 -3.8783 -2.1364 24 1 3.7869 -5.7396 -2.1535 25 1 4.7355 -6.5763 -0.0452 26 1 2.8803 -2.6645 2.7552 27 1 1.5267 -3.8215 2.9061 28 1 3.5164 -4.5763 4.3717 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118560.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:59 Heat of formation + Delta-G solvation = -30.976860 kcal Electronic energy + Delta-G solvation = -13840.312780 eV Core-core repulsion = 11433.957708 eV Total energy + Delta-G solvation = -2406.355072 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.00927 -39.20780 -36.90041 -35.43834 -33.13391 -31.57536 -29.08228 -27.52135 -25.44489 -24.00030 -22.42945 -20.44961 -18.49402 -18.39329 -17.44632 -16.82705 -16.71830 -16.41333 -15.72693 -14.81677 -14.58217 -14.48469 -14.22793 -13.94542 -13.30140 -13.23780 -12.82608 -12.71038 -12.46483 -12.22822 -11.54314 -11.49552 -10.95318 -10.56835 -10.40355 -9.80226 -9.42392 -8.17037 -6.28282 -0.13774 0.49153 1.41791 1.45237 1.55848 1.79437 2.22092 2.42994 2.92936 3.15667 3.25421 3.53491 4.01478 4.22962 4.43599 4.51330 4.56544 4.66726 4.86837 5.12303 5.17199 5.31671 5.42115 5.50565 5.67991 5.78873 5.92721 5.95206 6.00511 6.22211 6.84365 7.15156 7.40543 8.92251 Molecular weight = 217.08amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.008621 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.282239 B = 3246.957813 C = 3649.789125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.058 3.942 10 C -0.048 4.048 11 C -0.096 4.096 12 C -0.117 4.117 13 C -0.070 4.070 14 C -0.188 4.188 15 C -0.090 4.090 16 C 0.144 3.856 17 N -0.705 5.705 18 C 0.560 3.440 19 O -0.577 6.577 20 H 0.265 0.735 21 H 0.016 0.984 22 H 0.011 0.989 23 H 0.137 0.863 24 H 0.164 0.836 25 H 0.142 0.858 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.299 -6.619 1.243 7.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.071 0.929 9 C 0.021 3.979 10 C -0.048 4.048 11 C -0.114 4.114 12 C -0.134 4.134 13 C -0.089 4.089 14 C -0.191 4.191 15 C -0.091 4.091 16 C 0.020 3.980 17 N -0.360 5.360 18 C 0.349 3.651 19 O -0.459 6.459 20 H 0.074 0.926 21 H 0.034 0.966 22 H 0.029 0.971 23 H 0.155 0.845 24 H 0.182 0.818 25 H 0.159 0.841 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.530 -6.931 1.384 8.395 hybrid contribution 0.080 1.127 0.417 1.205 sum 4.610 -5.804 1.801 7.628 Atomic orbital electron populations 1.70058 1.07411 1.27745 1.51333 1.25742 0.95553 1.02475 0.94782 0.85543 0.79003 0.79610 0.77774 1.19234 1.20635 1.20385 1.21325 0.92954 0.90984 1.50735 0.92866 1.18104 0.92642 0.90235 0.96907 1.19717 0.97602 0.95860 0.91665 1.21514 0.96969 0.95329 0.97565 1.21371 0.96686 0.96659 0.98697 1.20977 0.98699 0.99070 0.90114 1.20503 1.03064 1.01062 0.94515 1.20294 0.97387 0.96142 0.95325 1.20486 0.96294 0.94704 0.86520 1.45741 1.45474 1.34718 1.10086 1.18467 0.79354 0.80408 0.86913 1.90723 1.37429 1.35453 1.82294 0.92643 0.96593 0.97083 0.84513 0.81810 0.84070 0.87881 0.87295 0.72228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.79 13.29 21.45 0.28 -51.51 15 2 C 0.01 0.70 5.46 84.66 0.46 1.16 15 3 Si 0.96 41.60 29.54 68.60 2.03 43.63 15 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 15 7 C -0.52 -27.02 9.09 25.60 0.23 -26.78 15 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 15 9 C 0.06 2.75 4.99 29.10 0.15 2.90 15 10 C -0.05 -1.89 5.06 -19.97 -0.10 -1.99 15 11 C -0.10 -3.21 9.69 22.36 0.22 -2.99 15 12 C -0.12 -3.23 10.02 22.23 0.22 -3.01 15 13 C -0.07 -2.11 10.10 22.53 0.23 -1.89 15 14 C -0.19 -6.56 6.26 -20.14 -0.13 -6.69 15 15 C -0.09 -3.27 6.15 -19.64 -0.12 -3.39 15 16 C 0.14 4.43 7.46 85.63 0.64 5.06 15 17 N -0.70 -20.02 6.41 -469.82 -3.01 -23.03 15 18 C 0.56 19.64 8.34 86.75 0.72 20.36 15 19 O -0.58 -23.21 18.04 -3.87 -0.07 -23.28 15 20 H 0.26 13.99 8.31 -92.70 -0.77 13.22 15 21 H 0.02 0.78 7.98 -2.38 -0.02 0.77 15 22 H 0.01 0.55 8.05 -2.39 -0.02 0.53 15 23 H 0.14 4.28 8.06 -2.91 -0.02 4.26 15 24 H 0.16 3.20 8.06 -2.91 -0.02 3.18 15 25 H 0.14 3.70 8.06 -2.91 -0.02 3.67 15 26 H 0.10 3.23 8.14 -2.39 -0.02 3.21 15 27 H 0.11 3.04 8.14 -2.39 -0.02 3.02 15 28 H 0.43 9.54 8.96 -92.71 -0.83 8.71 15 Total: -1.00 -63.42 252.73 2.10 -61.32 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.35 Total: 10.14 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 2.52 Total: -17.26 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -2.73 Total: -74.54 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -63.42 2.10 -61.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118560.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.342 kcal (2) G-P(sol) polarization free energy of solvation -63.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds