Wall clock time and date at job start Mon Mar 30 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47534 * 2 1 4 4 F 1.39899 * 109.46823 * 239.99927 * 2 1 3 5 5 N 1.46897 * 109.47229 * 120.00118 * 2 1 3 6 6 C 1.46956 * 111.00174 * 56.04475 * 5 2 1 7 7 C 1.53056 * 109.38342 * 176.80239 * 6 5 2 8 8 N 1.46992 * 109.33916 * 58.38486 * 7 6 5 9 9 C 1.46956 * 110.89694 * 300.69699 * 8 7 6 10 10 H 1.09002 * 109.50781 * 299.33843 * 9 8 7 11 11 C 1.50702 * 109.48699 * 179.28971 * 9 8 7 12 12 H 1.08002 * 119.99686 * 240.10300 * 11 9 8 13 13 C 1.37875 * 120.00656 * 60.10938 * 11 9 8 14 14 N 1.31520 * 119.99562 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00705 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46557 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47083 * 119.99542 * 15 13 11 18 18 H 1.48498 * 109.47173 * 240.00352 * 15 13 11 19 19 C 1.46954 * 111.00197 * 292.24176 * 5 2 1 20 20 H 1.09003 * 109.47052 * 300.00162 * 1 2 3 21 21 H 1.09001 * 109.47588 * 59.99757 * 1 2 3 22 22 H 1.09006 * 109.47165 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47515 * 180.02562 * 3 2 1 24 24 H 1.09005 * 109.46494 * 300.00409 * 3 2 1 25 25 H 1.08994 * 109.46951 * 59.99655 * 3 2 1 26 26 H 1.09002 * 109.48806 * 296.77967 * 6 5 2 27 27 H 1.09002 * 109.49141 * 56.82239 * 6 5 2 28 28 H 1.08999 * 109.48574 * 178.38177 * 7 6 5 29 29 H 1.09001 * 109.48542 * 298.44391 * 7 6 5 30 30 H 1.00901 * 110.99422 * 64.57265 * 8 7 6 31 31 H 0.97005 * 119.99873 * 179.97438 * 14 13 11 32 32 H 1.09005 * 109.48958 * 303.16114 * 19 5 2 33 33 H 1.09002 * 109.48674 * 63.19711 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 9 1.9962 -0.6595 -1.1423 5 7 2.0196 -0.6925 1.1994 6 6 1.4728 -2.0540 1.2816 7 6 2.0674 -2.7677 2.4981 8 7 1.7534 -2.0023 3.7131 9 6 2.3003 -0.6408 3.6308 10 1 3.3845 -0.6895 3.5298 11 6 1.9458 0.1199 4.8826 12 1 1.3554 1.0219 4.8173 13 6 2.3751 -0.3355 6.1111 14 7 3.0937 -1.4342 6.1905 15 14 1.9363 0.6077 7.6626 16 1 1.1270 1.8002 7.3045 17 1 1.1525 -0.2688 8.5697 18 1 3.1807 1.0418 8.3467 19 6 1.7056 0.0724 2.4143 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 0.3886 -2.0049 1.3829 27 1 1.7289 -2.6041 0.3761 28 1 1.6412 -3.7678 2.5772 29 1 3.1489 -2.8409 2.3839 30 1 0.7587 -1.9829 3.8811 31 1 3.3962 -1.7544 7.0548 32 1 2.1318 1.0725 2.3347 33 1 0.6241 0.1460 2.5282 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:11 Heat of formation + Delta-G solvation = -34.592311 kcal Electronic energy + Delta-G solvation = -15607.686494 eV Core-core repulsion = 13003.957177 eV Total energy + Delta-G solvation = -2603.729317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 216.133 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.34981 -38.63341 -34.66450 -32.55660 -30.27900 -29.91026 -27.47795 -25.26472 -24.27900 -21.65043 -20.52970 -18.95884 -17.01978 -15.99583 -15.43023 -15.15485 -14.49370 -14.08453 -14.07586 -13.52939 -13.09880 -12.98020 -12.45708 -12.38630 -12.09629 -11.98963 -11.69448 -11.37180 -10.98715 -10.91529 -10.69512 -10.60128 -10.42688 -10.01889 -9.71710 -8.96260 -8.43150 -7.98015 -6.82397 -5.89490 -4.05117 3.31540 3.40112 3.42129 4.07350 4.47770 4.68931 4.84270 4.96403 5.25395 5.46449 5.51319 5.61920 5.70362 5.74513 5.90241 5.95366 6.05486 6.13731 6.17251 6.28369 6.36781 6.38538 6.75094 6.82352 7.31546 7.38926 7.68609 7.89230 8.19867 8.57560 8.91545 9.10440 9.64020 11.14905 Molecular weight = 216.13amu Principal moments of inertia in cm(-1) A = 0.045214 B = 0.008734 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.134172 B = 3205.163071 C = 3550.635540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.275 3.725 3 C -0.166 4.166 4 F -0.207 7.207 5 N -0.547 5.547 6 C 0.015 3.985 7 C 0.060 3.940 8 N -0.648 5.648 9 C 0.228 3.772 10 H 0.047 0.953 11 C -0.541 4.541 12 H 0.054 0.946 13 C 0.084 3.916 14 N -0.844 5.844 15 Si 0.884 3.116 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.030 3.970 20 H 0.076 0.924 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.318 0.682 31 H 0.256 0.744 32 H 0.074 0.926 33 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 2.101 -9.741 10.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.168 3.832 3 C -0.224 4.224 4 F -0.187 7.187 5 N -0.274 5.274 6 C -0.115 4.115 7 C -0.071 4.071 8 N -0.276 5.276 9 C 0.120 3.880 10 H 0.065 0.935 11 C -0.580 4.580 12 H 0.072 0.928 13 C -0.123 4.123 14 N -0.478 5.478 15 Si 0.712 3.288 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.098 4.098 20 H 0.095 0.905 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.256 1.655 -9.311 10.001 hybrid contribution -1.749 0.855 0.092 1.949 sum -5.005 2.510 -9.218 10.785 Atomic orbital electron populations 1.22891 0.96500 1.03516 1.03535 1.21290 0.91110 0.90991 0.79806 1.22342 1.03346 0.93666 1.03062 1.92820 1.90593 1.83535 1.51797 1.62383 1.59518 1.03118 1.02411 1.22999 0.96743 0.90121 1.01642 1.22089 1.00906 0.96215 0.87885 1.61041 1.17135 1.17494 1.31899 1.19185 0.95939 0.83838 0.89068 0.93484 1.20914 1.36407 1.09795 0.90906 0.92766 1.24948 0.94351 0.94420 0.98595 1.70130 1.33530 1.20270 1.23887 0.86704 0.78187 0.80047 0.83910 1.19943 1.21077 1.21075 1.23229 0.98257 0.98303 0.90055 0.90458 0.91484 0.91364 0.90598 0.91655 0.90196 0.95286 0.91550 0.92197 0.91217 0.86558 0.93424 0.90775 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.85 8.20 37.16 0.30 -2.55 16 2 C 0.27 4.42 1.33 -67.72 -0.09 4.33 16 3 C -0.17 -2.34 8.44 37.16 0.31 -2.02 16 4 F -0.21 -3.57 16.40 2.25 0.04 -3.53 16 5 N -0.55 -10.23 4.71 -225.64 -1.06 -11.30 16 6 C 0.01 0.27 4.94 -3.76 -0.02 0.25 16 7 C 0.06 1.19 6.73 -3.74 -0.03 1.17 16 8 N -0.65 -15.13 5.88 -107.79 -0.63 -15.77 16 9 C 0.23 5.58 2.45 -68.81 -0.17 5.41 16 10 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 11 C -0.54 -14.40 8.69 -34.44 -0.30 -14.70 16 12 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 13 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 14 N -0.84 -24.22 12.78 55.43 0.71 -23.52 16 15 Si 0.88 20.81 29.54 -169.99 -5.02 15.78 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.03 0.61 4.02 -3.77 -0.02 0.59 16 20 H 0.08 1.08 6.68 -51.93 -0.35 0.73 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.07 0.96 6.42 -51.93 -0.33 0.62 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.11 6.25 -51.93 -0.32 0.78 16 26 H 0.03 0.50 6.43 -51.93 -0.33 0.17 16 27 H 0.07 1.13 7.71 -51.93 -0.40 0.73 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.32 7.24 8.79 -39.29 -0.35 6.89 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.07 1.46 6.01 -51.93 -0.31 1.15 16 33 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 LS Contribution 260.66 15.07 3.93 3.93 Total: -1.00 -28.40 260.66 -6.96 -35.36 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.82 Total: 4.36 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.09 Total: -5.32 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.99 Total: -50.58 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.04 Total: -3.53 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.40 -6.96 -35.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.765 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds