Wall clock time and date at job start Mon Mar 30 2020 02:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 F 1.39904 * 109.46850 * 240.00117 * 2 1 3 5 5 N 1.46896 * 109.47232 * 120.00191 * 2 1 3 6 6 C 1.46955 * 111.00303 * 56.19789 * 5 2 1 7 7 C 1.53045 * 109.37007 * 183.18890 * 6 5 2 8 8 N 1.46961 * 109.36120 * 301.60205 * 7 6 5 9 9 C 1.46960 * 110.88312 * 59.32004 * 8 7 6 10 10 H 1.08998 * 109.50877 * 60.65365 * 9 8 7 11 11 C 1.50694 * 109.49113 * 180.71220 * 9 8 7 12 12 H 1.08000 * 120.00563 * 119.88787 * 11 9 8 13 13 C 1.37885 * 119.99902 * 299.88951 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.46952 * 111.00017 * 180.02562 * 5 2 1 20 20 H 1.09006 * 109.46748 * 299.99665 * 1 2 3 21 21 H 1.08999 * 109.46934 * 59.99984 * 1 2 3 22 22 H 1.08999 * 109.46718 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46801 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.47054 * 300.00287 * 3 2 1 25 25 H 1.08995 * 109.46950 * 60.00067 * 3 2 1 26 26 H 1.08998 * 109.49044 * 303.15945 * 6 5 2 27 27 H 1.09002 * 109.48399 * 63.19664 * 6 5 2 28 28 H 1.09002 * 109.49168 * 61.56241 * 7 6 5 29 29 H 1.08996 * 109.49729 * 181.63102 * 7 6 5 30 30 H 1.00898 * 111.00183 * 295.44746 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.49037 * 56.84415 * 19 5 2 33 33 H 1.09005 * 109.48965 * 296.77753 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 9 1.9964 -0.6595 -1.1423 5 7 2.0198 -0.6925 1.1994 6 6 1.4758 -2.0553 1.2797 7 6 1.9446 -2.7132 2.5796 8 7 3.4137 -2.7327 2.6135 9 6 3.9577 -1.3699 2.5333 10 1 3.6050 -0.7865 3.3838 11 6 5.4634 -1.4276 2.5529 12 1 6.0298 -1.0346 1.7215 13 6 6.1181 -1.9823 3.6322 14 7 5.4284 -2.4605 4.6448 15 14 7.9845 -2.0545 3.6561 16 1 8.4391 -2.6922 4.9179 17 1 8.4640 -2.8506 2.4979 18 1 8.5342 -0.6776 3.5720 19 6 3.4888 -0.7116 1.2336 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 0.3867 -2.0135 1.2655 27 1 1.8284 -2.6383 0.4289 28 1 1.5688 -2.1453 3.4307 29 1 1.5661 -3.7342 2.6277 30 1 3.7847 -3.3141 1.8770 31 1 5.8890 -2.8510 5.4039 32 1 3.8669 0.3096 1.1859 33 1 3.8650 -1.2792 0.3825 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150715.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:13 Heat of formation + Delta-G solvation = -37.851778 kcal Electronic energy + Delta-G solvation = -15600.355640 eV Core-core repulsion = 12996.484982 eV Total energy + Delta-G solvation = -2603.870658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 216.133 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.37803 -38.26307 -34.56266 -32.49301 -30.51655 -30.17493 -27.45341 -25.21936 -23.93537 -21.63442 -20.21413 -19.28786 -17.07393 -15.96057 -15.37034 -15.13088 -14.46913 -14.10715 -13.92355 -13.55807 -13.14466 -12.80198 -12.39843 -12.31899 -12.13063 -11.97338 -11.74953 -11.16291 -11.01172 -10.88933 -10.69245 -10.49391 -10.40619 -9.96209 -9.67429 -8.94713 -8.39706 -8.19028 -6.80933 -5.86451 -4.01496 3.36360 3.41256 3.43402 4.12183 4.50857 4.75198 4.80940 5.02565 5.27398 5.50018 5.58752 5.70637 5.73496 5.75846 5.92494 6.00748 6.05548 6.16646 6.18814 6.29033 6.40358 6.44939 6.80269 6.82557 7.27475 7.43850 7.69135 7.92467 8.23435 8.60769 8.94151 9.13257 9.67188 11.18015 Molecular weight = 216.13amu Principal moments of inertia in cm(-1) A = 0.045016 B = 0.008788 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.853913 B = 3185.361129 C = 3535.543489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.258 3.742 3 C -0.163 4.163 4 F -0.236 7.236 5 N -0.534 5.534 6 C 0.011 3.989 7 C 0.060 3.940 8 N -0.649 5.649 9 C 0.229 3.771 10 H 0.046 0.954 11 C -0.541 4.541 12 H 0.053 0.947 13 C 0.084 3.916 14 N -0.846 5.846 15 Si 0.885 3.115 16 H -0.288 1.288 17 H -0.278 1.278 18 H -0.278 1.278 19 C 0.022 3.978 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.319 0.681 31 H 0.257 0.743 32 H 0.071 0.929 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 3.827 -7.069 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.151 3.849 3 C -0.220 4.220 4 F -0.218 7.218 5 N -0.262 5.262 6 C -0.119 4.119 7 C -0.071 4.071 8 N -0.276 5.276 9 C 0.121 3.879 10 H 0.064 0.936 11 C -0.581 4.581 12 H 0.071 0.929 13 C -0.123 4.123 14 N -0.480 5.480 15 Si 0.712 3.288 16 H -0.213 1.213 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.106 4.106 20 H 0.099 0.901 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.764 3.943 -5.781 11.215 hybrid contribution 1.109 -0.333 -1.764 2.110 sum -7.655 3.611 -7.545 11.338 Atomic orbital electron populations 1.22312 0.93201 1.03352 1.03204 1.21898 0.94188 0.92111 0.76726 1.22277 1.02994 0.93767 1.02996 1.92858 1.90572 1.83331 1.55011 1.62952 1.11522 1.17872 1.33805 1.23032 0.99399 0.89037 1.00398 1.22083 0.92326 0.98217 0.94459 1.61057 1.01299 1.14194 1.51058 1.19153 0.93978 0.85017 0.89708 0.93564 1.20868 0.90119 1.42556 1.04510 0.92882 1.24942 0.97410 0.94540 0.95384 1.70104 1.34542 1.36728 1.06632 0.86817 0.86575 0.78159 0.77215 1.21334 1.20395 1.20381 1.23194 0.83651 1.01786 1.01988 0.90081 0.91637 0.91483 0.90980 0.91747 0.90071 0.91360 0.95221 0.91248 0.92220 0.86456 0.93347 0.91064 0.95444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.58 37.16 0.32 -1.75 16 2 C 0.26 4.14 1.14 -67.71 -0.08 4.06 16 3 C -0.16 -2.28 8.70 37.16 0.32 -1.96 16 4 F -0.24 -4.30 15.84 2.25 0.04 -4.26 16 5 N -0.53 -9.97 4.55 -225.64 -1.03 -10.99 16 6 C 0.01 0.20 5.08 -3.77 -0.02 0.18 16 7 C 0.06 1.19 6.72 -3.77 -0.03 1.17 16 8 N -0.65 -15.50 5.88 -107.82 -0.63 -16.13 16 9 C 0.23 5.77 2.45 -68.81 -0.17 5.60 16 10 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 11 C -0.54 -14.87 8.69 -34.44 -0.30 -15.17 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 14 N -0.85 -24.56 12.78 55.43 0.71 -23.86 16 15 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.02 0.48 4.35 -3.77 -0.02 0.47 16 20 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.85 6.28 -51.93 -0.33 0.52 16 23 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.05 6.06 -51.93 -0.31 0.74 16 27 H 0.03 0.56 7.87 -51.93 -0.41 0.15 16 28 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.32 7.58 8.79 -39.29 -0.35 7.23 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.07 1.51 6.14 -51.93 -0.32 1.19 16 33 H 0.03 0.62 7.78 -51.93 -0.40 0.22 16 LS Contribution 263.29 15.07 3.97 3.97 Total: -1.00 -29.16 263.29 -6.98 -36.14 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.95 Total: 4.07 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.06 Total: -5.14 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.95 Total: -50.98 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.04 Total: -4.26 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.16 -6.98 -36.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150715.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.717 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds