Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 F 1.39904 * 109.46850 * 240.00117 * 2 1 3 5 5 N 1.46896 * 109.47232 * 120.00191 * 2 1 3 6 6 C 1.46955 * 111.00303 * 56.19789 * 5 2 1 7 7 C 1.53045 * 109.37007 * 183.18890 * 6 5 2 8 8 N 1.46961 * 109.36120 * 301.60205 * 7 6 5 9 9 C 1.46960 * 110.88312 * 59.32004 * 8 7 6 10 10 H 1.08998 * 109.50877 * 60.65365 * 9 8 7 11 11 C 1.50694 * 109.49113 * 180.71220 * 9 8 7 12 12 H 1.08000 * 120.00563 * 119.88787 * 11 9 8 13 13 C 1.37885 * 119.99902 * 299.88951 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.46952 * 111.00017 * 180.02562 * 5 2 1 20 20 H 1.09006 * 109.46748 * 299.99665 * 1 2 3 21 21 H 1.08999 * 109.46934 * 59.99984 * 1 2 3 22 22 H 1.08999 * 109.46718 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46801 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.47054 * 300.00287 * 3 2 1 25 25 H 1.08995 * 109.46950 * 60.00067 * 3 2 1 26 26 H 1.08998 * 109.49044 * 303.15945 * 6 5 2 27 27 H 1.09002 * 109.48399 * 63.19664 * 6 5 2 28 28 H 1.09002 * 109.49168 * 61.56241 * 7 6 5 29 29 H 1.08996 * 109.49729 * 181.63102 * 7 6 5 30 30 H 1.00898 * 111.00183 * 295.44746 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.49037 * 56.84415 * 19 5 2 33 33 H 1.09005 * 109.48965 * 296.77753 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 9 1.9964 -0.6595 -1.1423 5 7 2.0198 -0.6925 1.1994 6 6 1.4758 -2.0553 1.2797 7 6 1.9446 -2.7132 2.5796 8 7 3.4137 -2.7327 2.6135 9 6 3.9577 -1.3699 2.5333 10 1 3.6050 -0.7865 3.3838 11 6 5.4634 -1.4276 2.5529 12 1 6.0298 -1.0346 1.7215 13 6 6.1181 -1.9823 3.6322 14 7 5.4284 -2.4605 4.6448 15 14 7.9845 -2.0545 3.6561 16 1 8.4391 -2.6922 4.9179 17 1 8.4640 -2.8506 2.4979 18 1 8.5342 -0.6776 3.5720 19 6 3.4888 -0.7116 1.2336 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 0.3867 -2.0135 1.2655 27 1 1.8284 -2.6383 0.4289 28 1 1.5688 -2.1453 3.4307 29 1 1.5661 -3.7342 2.6277 30 1 3.7847 -3.3141 1.8770 31 1 5.8890 -2.8510 5.4039 32 1 3.8669 0.3096 1.1859 33 1 3.8650 -1.2792 0.3825 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261150715.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = -59.207356 kcal Electronic energy + Delta-G solvation = -15601.281688 eV Core-core repulsion = 12996.484982 eV Total energy + Delta-G solvation = -2604.796706 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 216.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.72706 -39.88887 -36.14113 -34.41244 -32.05695 -31.84064 -28.70777 -27.05074 -25.63814 -23.30606 -21.76485 -20.89347 -18.81449 -17.71072 -16.72009 -16.58237 -16.27259 -15.60676 -15.57485 -15.33180 -14.84718 -14.41497 -13.88023 -13.64766 -13.34442 -13.18485 -13.04336 -12.87855 -12.75309 -12.49980 -12.44675 -12.15505 -11.97335 -11.61811 -11.49751 -10.93663 -10.52805 -9.74675 -8.62772 -7.98412 -6.20801 1.45125 1.45951 1.53464 2.44951 2.74355 3.22505 3.60268 3.62364 3.85444 3.88399 4.21876 4.30665 4.39854 4.46449 4.59242 4.65755 4.68715 4.72226 4.81055 4.91060 5.05483 5.13411 5.15989 5.22086 5.45219 5.71369 5.94489 6.00283 6.20318 6.61506 7.06099 7.08859 7.51875 9.05137 Molecular weight = 216.13amu Principal moments of inertia in cm(-1) A = 0.045016 B = 0.008788 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.853913 B = 3185.361129 C = 3535.543489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.246 3.754 3 C -0.161 4.161 4 F -0.249 7.249 5 N -0.539 5.539 6 C 0.019 3.981 7 C 0.062 3.938 8 N -0.669 5.669 9 C 0.234 3.766 10 H 0.008 0.992 11 C -0.560 4.560 12 H 0.049 0.951 13 C 0.037 3.963 14 N -0.878 5.878 15 Si 0.950 3.050 16 H -0.284 1.284 17 H -0.274 1.274 18 H -0.272 1.272 19 C 0.041 3.959 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.022 0.978 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.317 0.683 31 H 0.256 0.744 32 H 0.071 0.929 33 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 4.247 -7.998 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.139 3.861 3 C -0.218 4.218 4 F -0.231 7.231 5 N -0.267 5.267 6 C -0.111 4.111 7 C -0.069 4.069 8 N -0.297 5.297 9 C 0.125 3.875 10 H 0.026 0.974 11 C -0.599 4.599 12 H 0.067 0.933 13 C -0.167 4.167 14 N -0.513 5.513 15 Si 0.776 3.224 16 H -0.210 1.210 17 H -0.200 1.200 18 H -0.197 1.197 19 C -0.089 4.089 20 H 0.110 0.890 21 H 0.107 0.893 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -9.655 4.373 -6.724 12.552 hybrid contribution 1.320 -0.447 -1.485 2.036 sum -8.335 3.927 -8.208 12.340 Atomic orbital electron populations 1.22302 0.90042 1.04050 1.04976 1.22340 0.96469 0.92282 0.74975 1.22298 1.01823 0.92918 1.04807 1.92836 1.90988 1.83734 1.55558 1.62919 1.09329 1.18509 1.35911 1.22950 1.01185 0.88348 0.98591 1.22098 0.89846 0.99714 0.95196 1.60838 1.03961 1.13460 1.51419 1.18862 0.93057 0.85637 0.89911 0.97384 1.21221 0.91724 1.42434 1.04499 0.93259 1.25675 1.01882 0.94162 0.94986 1.70233 1.36286 1.37632 1.07163 0.85771 0.81084 0.78311 0.77233 1.20964 1.19959 1.19735 1.22768 0.85982 1.00903 0.99221 0.88957 0.89274 0.91308 0.92861 0.89046 0.89173 0.88019 0.95992 0.92419 0.89993 0.86703 0.93452 0.91114 0.97078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.58 71.98 0.62 -2.79 16 2 C 0.25 7.36 1.14 44.92 0.05 7.41 16 3 C -0.16 -4.18 8.70 71.98 0.63 -3.56 16 4 F -0.25 -8.67 15.84 44.97 0.71 -7.96 16 5 N -0.54 -19.57 4.55 -867.79 -3.95 -23.52 16 6 C 0.02 0.64 5.08 86.31 0.44 1.07 16 7 C 0.06 2.41 6.72 86.31 0.58 2.99 16 8 N -0.67 -32.45 5.88 -495.02 -2.91 -35.36 16 9 C 0.23 12.05 2.45 44.17 0.11 12.16 16 10 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 11 C -0.56 -31.36 8.69 25.60 0.22 -31.13 16 12 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 13 C 0.04 2.09 5.39 84.66 0.46 2.54 16 14 N -0.88 -51.83 12.78 21.45 0.27 -51.56 16 15 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 C 0.04 1.78 4.35 86.31 0.38 2.15 16 20 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 21 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.07 1.48 6.28 -2.39 -0.01 1.47 16 23 H 0.05 1.57 6.34 -2.39 -0.02 1.56 16 24 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.10 2.82 6.06 -2.39 -0.01 2.81 16 27 H 0.02 0.79 7.87 -2.39 -0.02 0.77 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.32 15.31 8.79 -89.70 -0.79 14.52 16 31 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.07 3.04 6.14 -2.39 -0.01 3.03 16 33 H 0.01 0.51 7.78 -2.38 -0.02 0.49 16 Total: -1.00 -62.97 263.29 -0.06 -63.03 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.31 Total: 18.52 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 3.48 Total: -9.14 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -6.58 Total: -110.44 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 0.71 Total: -7.96 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -62.97 -0.06 -63.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150715.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.821 kcal (2) G-P(sol) polarization free energy of solvation -62.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds