Wall clock time and date at job start Mon Mar 30 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46762 * 2 1 4 4 C 1.50704 * 109.47156 * 119.99774 * 2 1 3 5 5 H 1.07997 * 120.00115 * 114.03441 * 4 2 1 6 6 C 1.37878 * 120.00055 * 294.02717 * 4 2 1 7 7 N 1.31519 * 119.99761 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46955 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47230 * 120.00183 * 8 6 4 11 11 H 1.48500 * 109.47296 * 240.00544 * 8 6 4 12 12 C 1.52999 * 109.47244 * 239.99795 * 2 1 3 13 13 C 1.50701 * 115.54895 * 160.24929 * 12 2 1 14 14 C 1.38243 * 119.99861 * 113.61231 * 13 12 2 15 15 C 1.38235 * 119.99684 * 179.76467 * 14 13 12 16 16 C 1.38235 * 120.00105 * 0.50519 * 15 14 13 17 17 C 1.38231 * 119.99882 * 359.75335 * 16 15 14 18 18 C 1.38229 * 120.00382 * 359.97438 * 17 16 15 19 19 C 1.53000 * 117.49720 * 14.54532 * 12 2 1 20 20 C 1.52999 * 117.49851 * 305.91983 * 12 2 1 21 21 H 1.08995 * 109.46699 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46959 * 299.99978 * 1 2 3 23 23 H 1.09000 * 109.47131 * 60.00130 * 1 2 3 24 24 H 0.97006 * 119.99500 * 179.97438 * 7 6 4 25 25 H 1.07999 * 119.99722 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.99893 * 180.23148 * 15 14 13 27 27 H 1.07994 * 119.99779 * 179.72191 * 16 15 14 28 28 H 1.08004 * 119.99886 * 179.97438 * 17 16 15 29 29 H 1.07999 * 120.00387 * 179.97438 * 18 17 16 30 30 H 1.09002 * 117.50028 * 359.97438 * 19 12 2 31 31 H 1.09001 * 117.49727 * 145.02207 * 19 12 2 32 32 H 1.08996 * 117.49855 * 214.97416 * 20 12 2 33 33 H 1.08995 * 117.49987 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5715 -1.6412 1.1344 6 6 1.8038 -0.1719 2.4790 7 7 1.1469 0.9615 2.5961 8 14 2.4271 -1.0520 4.0043 9 1 3.1294 -2.2979 3.6045 10 1 3.3671 -0.1665 4.7373 11 1 1.2795 -1.3917 4.8834 12 6 2.0400 -0.7213 -1.2492 13 6 3.4632 -0.4165 -1.6402 14 6 4.4261 -1.4060 -1.5707 15 6 5.7305 -1.1276 -1.9340 16 6 6.0742 0.1428 -2.3568 17 6 5.1124 1.1336 -2.4211 18 6 3.8069 0.8539 -2.0632 19 6 1.0370 -0.9781 -2.3756 20 6 1.5249 -2.1388 -1.5063 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.9858 1.3402 3.4745 25 1 4.1583 -2.3975 -1.2367 26 1 6.4820 -1.9016 -1.8833 27 1 7.0942 0.3614 -2.6363 28 1 5.3810 2.1263 -2.7510 29 1 3.0555 1.6281 -2.1131 30 1 0.0136 -0.6336 -2.2266 31 1 1.4064 -0.9266 -3.3999 32 1 2.2152 -2.8508 -1.9586 33 1 0.8223 -2.5574 -0.7857 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:14 Heat of formation + Delta-G solvation = 38.814680 kcal Electronic energy + Delta-G solvation = -14337.229796 eV Core-core repulsion = 12135.160118 eV Total energy + Delta-G solvation = -2202.069678 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.23018 -36.89103 -32.98607 -30.42176 -30.14131 -29.45765 -25.23092 -23.50348 -22.36426 -21.34257 -20.86461 -18.10427 -16.42816 -15.97026 -15.17558 -14.49293 -14.23341 -14.10018 -13.37065 -12.90627 -12.64579 -12.19993 -11.97892 -11.39278 -11.02545 -10.98157 -10.81298 -10.61008 -10.46995 -10.29141 -10.16388 -9.56293 -9.46329 -9.27336 -8.50550 -8.40356 -8.27815 -7.94185 -5.94489 -3.97309 1.92371 1.92740 3.32528 3.40610 3.44693 4.30269 4.45691 4.69885 5.27758 5.38500 5.39960 5.44395 5.61241 5.75248 5.80555 5.93627 6.12332 6.20211 6.27468 6.47977 6.55687 6.64230 6.75597 6.83308 6.95389 6.97058 7.02408 7.18472 7.27444 7.40665 7.55609 7.76639 7.99300 8.10582 8.50465 9.06003 9.66296 11.13522 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.025482 B = 0.010771 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.558438 B = 2598.902383 C = 3054.510618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.035 0.965 4 C -0.497 4.497 5 H 0.056 0.944 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.887 3.113 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 C -0.064 4.064 13 C -0.011 4.011 14 C -0.113 4.113 15 C -0.126 4.126 16 C -0.139 4.139 17 C -0.124 4.124 18 C -0.110 4.110 19 C -0.188 4.188 20 C -0.169 4.169 21 H 0.028 0.972 22 H 0.072 0.928 23 H 0.013 0.987 24 H 0.258 0.742 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -2.310 -8.986 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.064 4.064 13 C -0.011 4.011 14 C -0.131 4.131 15 C -0.144 4.144 16 C -0.158 4.158 17 C -0.142 4.142 18 C -0.128 4.128 19 C -0.225 4.225 20 C -0.206 4.206 21 H 0.047 0.953 22 H 0.091 0.909 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.136 0.864 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.433 -2.190 -8.846 10.134 hybrid contribution 0.390 -0.434 1.027 1.181 sum 4.823 -2.624 -7.818 9.554 Atomic orbital electron populations 1.21893 0.98898 0.98871 0.99626 1.18229 0.91723 0.95316 0.88332 0.94705 1.21128 1.34642 1.07508 0.90284 0.92621 1.24946 0.95377 0.94960 0.98852 1.69936 1.41314 1.18754 1.23273 0.86616 0.78560 0.79855 0.83479 1.19813 1.21174 1.21197 1.20605 0.89580 0.98575 0.97677 1.19218 0.94265 0.93011 0.94561 1.21033 0.92733 0.99577 0.99726 1.21023 0.96195 0.96710 1.00430 1.20955 0.98769 0.93727 1.02308 1.21021 0.93401 0.98725 1.01068 1.20971 0.96135 0.96549 0.99191 1.23183 1.00099 1.04333 0.94897 1.22863 1.03706 0.91395 1.02634 0.95273 0.90913 0.96775 0.93235 0.86378 0.86868 0.87005 0.86770 0.86308 0.88367 0.90482 0.90336 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 7.71 37.16 0.29 -2.90 16 2 C 0.08 2.04 2.19 -91.77 -0.20 1.83 16 3 H 0.03 0.96 7.91 -51.93 -0.41 0.55 16 4 C -0.50 -13.55 8.26 -34.44 -0.28 -13.84 16 5 H 0.06 1.53 7.73 -52.49 -0.41 1.12 16 6 C 0.06 1.65 5.33 -17.82 -0.09 1.55 16 7 N -0.89 -25.79 11.77 55.43 0.65 -25.14 16 8 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 C -0.06 -1.33 1.61 -155.66 -0.25 -1.58 16 13 C -0.01 -0.21 5.10 -104.62 -0.53 -0.74 16 14 C -0.11 -2.06 9.22 -39.58 -0.37 -2.42 16 15 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 16 C -0.14 -2.12 10.05 -39.59 -0.40 -2.52 16 17 C -0.12 -1.99 10.05 -39.59 -0.40 -2.39 16 18 C -0.11 -2.04 9.49 -39.59 -0.38 -2.41 16 19 C -0.19 -3.38 9.37 -26.73 -0.25 -3.63 16 20 C -0.17 -3.16 8.83 -26.73 -0.24 -3.40 16 21 H 0.03 0.65 6.93 -51.93 -0.36 0.29 16 22 H 0.07 1.91 6.56 -51.93 -0.34 1.57 16 23 H 0.01 0.29 6.70 -51.93 -0.35 -0.06 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.12 2.07 7.07 -52.49 -0.37 1.70 16 26 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 29 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.10 1.75 5.89 -51.93 -0.31 1.44 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 33 H 0.10 1.88 7.23 -51.93 -0.38 1.51 16 LS Contribution 271.77 15.07 4.10 4.10 Total: -1.00 -28.73 271.77 -8.31 -37.04 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.54 Total: 2.22 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: -3.50 Total: -34.84 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.65 Total: -25.14 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.73 -8.31 -37.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.855 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds