Wall clock time and date at job start Mon Mar 30 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46762 * 2 1 4 4 C 1.50704 * 109.47156 * 119.99774 * 2 1 3 5 5 H 1.07997 * 120.00115 * 114.03441 * 4 2 1 6 6 C 1.37878 * 120.00055 * 294.02717 * 4 2 1 7 7 N 1.31519 * 119.99761 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46955 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47230 * 120.00183 * 8 6 4 11 11 H 1.48500 * 109.47296 * 240.00544 * 8 6 4 12 12 C 1.52999 * 109.47244 * 239.99795 * 2 1 3 13 13 C 1.50701 * 115.54895 * 160.24929 * 12 2 1 14 14 C 1.38243 * 119.99861 * 113.61231 * 13 12 2 15 15 C 1.38235 * 119.99684 * 179.76467 * 14 13 12 16 16 C 1.38235 * 120.00105 * 0.50519 * 15 14 13 17 17 C 1.38231 * 119.99882 * 359.75335 * 16 15 14 18 18 C 1.38229 * 120.00382 * 359.97438 * 17 16 15 19 19 C 1.53000 * 117.49720 * 14.54532 * 12 2 1 20 20 C 1.52999 * 117.49851 * 305.91983 * 12 2 1 21 21 H 1.08995 * 109.46699 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46959 * 299.99978 * 1 2 3 23 23 H 1.09000 * 109.47131 * 60.00130 * 1 2 3 24 24 H 0.97006 * 119.99500 * 179.97438 * 7 6 4 25 25 H 1.07999 * 119.99722 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.99893 * 180.23148 * 15 14 13 27 27 H 1.07994 * 119.99779 * 179.72191 * 16 15 14 28 28 H 1.08004 * 119.99886 * 179.97438 * 17 16 15 29 29 H 1.07999 * 120.00387 * 179.97438 * 18 17 16 30 30 H 1.09002 * 117.50028 * 359.97438 * 19 12 2 31 31 H 1.09001 * 117.49727 * 145.02207 * 19 12 2 32 32 H 1.08996 * 117.49855 * 214.97416 * 20 12 2 33 33 H 1.08995 * 117.49987 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5715 -1.6412 1.1344 6 6 1.8038 -0.1719 2.4790 7 7 1.1469 0.9615 2.5961 8 14 2.4271 -1.0520 4.0043 9 1 3.1294 -2.2979 3.6045 10 1 3.3671 -0.1665 4.7373 11 1 1.2795 -1.3917 4.8834 12 6 2.0400 -0.7213 -1.2492 13 6 3.4632 -0.4165 -1.6402 14 6 4.4261 -1.4060 -1.5707 15 6 5.7305 -1.1276 -1.9340 16 6 6.0742 0.1428 -2.3568 17 6 5.1124 1.1336 -2.4211 18 6 3.8069 0.8539 -2.0632 19 6 1.0370 -0.9781 -2.3756 20 6 1.5249 -2.1388 -1.5063 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.9858 1.3402 3.4745 25 1 4.1583 -2.3975 -1.2367 26 1 6.4820 -1.9016 -1.8833 27 1 7.0942 0.3614 -2.6363 28 1 5.3810 2.1263 -2.7510 29 1 3.0555 1.6281 -2.1131 30 1 0.0136 -0.6336 -2.2266 31 1 1.4064 -0.9266 -3.3999 32 1 2.2152 -2.8508 -1.9586 33 1 0.8223 -2.5574 -0.7857 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:14 Heat of formation + Delta-G solvation = 25.253178 kcal Electronic energy + Delta-G solvation = -14337.817866 eV Core-core repulsion = 12135.160118 eV Total energy + Delta-G solvation = -2202.657749 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.65120 -38.36711 -34.99780 -31.81158 -31.58466 -31.19061 -27.26020 -25.12101 -23.75438 -22.85563 -22.34324 -19.72857 -18.10339 -17.78553 -16.82352 -16.11870 -15.71457 -15.49542 -14.89536 -14.55170 -14.16533 -13.84082 -13.49925 -13.11009 -12.90416 -12.71141 -12.53228 -12.24217 -12.11306 -11.94361 -11.91175 -11.26361 -11.17467 -10.96680 -10.44672 -10.23934 -9.69277 -9.33809 -8.06651 -6.15784 0.61972 0.62638 1.37985 1.40327 1.51008 2.43801 2.97052 3.19184 3.23500 3.89161 4.14334 4.19008 4.27461 4.36816 4.39085 4.54248 4.77686 4.78834 4.85959 4.95513 5.00649 5.10058 5.23534 5.27490 5.35730 5.43895 5.47210 5.64190 5.70613 5.74924 5.91896 5.99750 6.09218 6.28166 6.43480 6.94499 7.50641 9.00299 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.025482 B = 0.010771 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.558438 B = 2598.902383 C = 3054.510618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.083 3.917 3 H -0.004 1.004 4 C -0.504 4.504 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.945 3.055 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.281 1.281 12 C -0.085 4.085 13 C -0.037 4.037 14 C -0.132 4.132 15 C -0.125 4.125 16 C -0.135 4.135 17 C -0.125 4.125 18 C -0.134 4.134 19 C -0.169 4.169 20 C -0.162 4.162 21 H 0.035 0.965 22 H 0.041 0.959 23 H 0.035 0.965 24 H 0.258 0.742 25 H 0.118 0.882 26 H 0.143 0.857 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.058 -3.203 -9.963 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.772 3.228 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.207 1.207 12 C -0.085 4.085 13 C -0.037 4.037 14 C -0.150 4.150 15 C -0.143 4.143 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.152 4.152 19 C -0.206 4.206 20 C -0.199 4.199 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.136 0.864 26 H 0.161 0.839 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.995 -3.092 -9.831 11.923 hybrid contribution -0.054 -0.123 1.290 1.297 sum 5.941 -3.215 -8.541 10.889 Atomic orbital electron populations 1.21732 0.98350 0.99009 0.99122 1.18061 0.92129 0.93448 0.89870 0.98570 1.21408 1.34090 1.07241 0.91507 0.93223 1.25683 0.95807 0.95703 1.01691 1.70063 1.42496 1.20038 1.23752 0.85689 0.78075 0.78912 0.80140 1.19139 1.21086 1.20712 1.20371 0.91201 0.99724 0.97217 1.19276 0.94002 0.94090 0.96286 1.21181 0.93704 0.99392 1.00677 1.21403 0.95781 0.97973 0.99094 1.21405 1.00234 0.92984 1.00695 1.21370 0.92476 1.00383 1.00038 1.21094 0.97422 0.96157 1.00539 1.23204 0.99366 1.02829 0.95184 1.22868 1.03504 0.91070 1.02468 0.94639 0.94014 0.94608 0.93325 0.86419 0.83897 0.83378 0.84130 0.87209 0.88327 0.88478 0.88402 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 7.71 71.98 0.55 -5.43 16 2 C 0.08 4.22 2.19 -11.54 -0.03 4.20 16 3 H 0.00 -0.22 7.91 -2.38 -0.02 -0.24 16 4 C -0.50 -27.96 8.26 25.60 0.21 -27.75 16 5 H 0.05 2.75 7.73 -2.91 -0.02 2.73 16 6 C 0.01 0.49 5.33 84.65 0.45 0.94 16 7 N -0.92 -54.65 11.77 21.45 0.25 -54.40 16 8 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 C -0.09 -3.53 1.61 -52.93 -0.09 -3.61 16 13 C -0.04 -1.43 5.10 -19.86 -0.10 -1.53 16 14 C -0.13 -4.63 9.22 22.27 0.21 -4.42 16 15 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 16 C -0.14 -3.65 10.05 22.27 0.22 -3.43 16 17 C -0.12 -3.74 10.05 22.27 0.22 -3.51 16 18 C -0.13 -4.91 9.49 22.27 0.21 -4.69 16 19 C -0.17 -5.87 9.37 30.60 0.29 -5.59 16 20 C -0.16 -5.92 8.83 30.60 0.27 -5.65 16 21 H 0.03 1.60 6.93 -2.39 -0.02 1.59 16 22 H 0.04 2.24 6.56 -2.39 -0.02 2.22 16 23 H 0.04 1.51 6.70 -2.39 -0.02 1.49 16 24 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 25 H 0.12 4.01 7.07 -2.91 -0.02 3.99 16 26 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 27 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 28 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.10 3.38 5.89 -2.39 -0.01 3.37 16 31 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.10 3.15 7.18 -2.39 -0.02 3.14 16 33 H 0.08 3.25 7.23 -2.39 -0.02 3.23 16 Total: -1.00 -62.29 271.77 6.01 -56.28 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.08 Total: 15.19 kcal Atomic # 6 Polarization: -66.52 SS G_CDS: 2.65 Total: -63.87 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.25 Total: -54.40 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -62.29 6.01 -56.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.531 kcal (2) G-P(sol) polarization free energy of solvation -62.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds